Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k22f
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    30   0.10 
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    29   0.31 
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    29   0.31 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    28   0.55 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   0.55 
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   0.96 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   1.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.3  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   1.3  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   1.7  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    26   2.2  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   2.9  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   3.9  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    24   6.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   6.8  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    24   9.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   9.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   9.0  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    24   9.0  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    24   9.0  

>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 30.3 bits (65), Expect = 0.10
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
 Frame = +3

Query: 75  MDDFGDSFVEPEVDPA---ADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD----F 233
           ++DF D  V   VD +    DFL RE+  L     + ET     A+    N  +     F
Sbjct: 7   LEDFDDGLVTAPVDDSKNNTDFLEREKLALGEDAGQFETPEDKDALLNFENDSEAEQTRF 66

Query: 234 VE--VPSASAFDANGLLD--DAP-LGSTPTTVFKQEREEPEKIKIWREEQKK 374
            +   P  +   A+G      AP +G       + E  +PE ++ W+E+Q K
Sbjct: 67  EQNFPPIDAEMQASGTFSAPKAPYMGQAEVHPPEDESGDPEPVRKWKEDQMK 118


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 326 FLFEYCC-WSGSQWSIIQQTVSIK 258
           FLF YCC W    W I+ +T  I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 326 FLFEYCC-WSGSQWSIIQQTVSIK 258
           FLF YCC W    W I+ +T  I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 111 VDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 287
           V+   D  + E+N     + E+ETS  PPA+S ST   ++   + S++  +   L D A
Sbjct: 454 VEVHTDANSPEENNTPVTKKEVETS-KPPAVSGSTPPVNEAAVIESSNTLEKEPLSDVA 511


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 119 WIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHS 15
           W++   N+TV++II       ++S+N M VDF+ S
Sbjct: 621 WVETEANDTVTEIISSDSESLSQSLN-MAVDFRQS 654


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -3

Query: 374 FFLFFSPYFDLLRFLTFLFEYCCWSGSQWSIIQQTVSIKC*CTGYF 237
           FF + + Y   + F T+ +    WS   W+    T++I     G F
Sbjct: 379 FFYYLAGYLQSMYFTTYTWILYDWSYRDWTYFNNTMTIALCVFGVF 424


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +3

Query: 180 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQEREEPEKIKIWR 359
           +++  P+ +T+ N   + V    A+  D N ++  A        V K ++EE E+I   +
Sbjct: 594 SNSDTPSETTTPNNEQEQVS-NQANKVDLNKIISAAMESVNQKNVLKAQKEEEERIAQQK 652

Query: 360 EEQKK 374
            E+K+
Sbjct: 653 REEKR 657


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 162  LEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 263
            L+D      PP  ++   N   D+  +P+ S+FD
Sbjct: 2417 LKDAANYGLPPITMNVKVNDTGDYSNIPTVSSFD 2450


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 177 ETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQ 323
           E    P   S +  GF+D+V  P++     + ++    L S+P+T + Q
Sbjct: 348 EAGGSPSKSSPTRPGFNDYVNRPTSVMPSLSNMIVSPDLDSSPSTDWNQ 396


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 180 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 311
           +S  PP++  S N        P+ S +D NGL    P+GS   T
Sbjct: 187 SSGKPPSLHLSGNRRLSMGS-PTKSIYDQNGLTTPRPIGSDDLT 229


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +3

Query: 141 EQNQLAGLE-DELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLD-DAPLGSTPTTV 314
           E  +L   E DEL+ S PP       +   + +E+    A   + +LD +  +    T V
Sbjct: 78  EDRELTSEELDELKKSLPPGQAIVRRDDDGNIIEIIHGEAKTLDDVLDKEISIAPAKTEV 137

Query: 315 FKQEREEPEKIKIWREEQK 371
            +Q  EE  K K  R+  K
Sbjct: 138 VRQLEEEAVK-KAARQSNK 155


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 195 PAISTSTNGFDDFVEVPSASA 257
           P I +ST   +DFVEVP  SA
Sbjct: 203 PQIFSSTLYINDFVEVPGTSA 223


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 147 NQLAGLEDELETS--APPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPT 308
           N++  ++D L T      P   +   G +   ++PSAS  + +  L  +P G  PT
Sbjct: 375 NRIGSVDDLLNTRQFTSSPIGGSMPKGPNSIYKIPSASMVNLSSPLVTSPSGLNPT 430


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 292 NGASSNRPLASNADALGTSTKSSNPF 215
           N  S +    SN D  GTS+  S PF
Sbjct: 428 NSTSMDGVAVSNMDETGTSSAGSKPF 453


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 180 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 311
           TS PPP  STS+ G      + ++++   +  +      +TP T
Sbjct: 367 TSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVT 410



 Score = 23.8 bits (49), Expect = 9.0
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 180 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTV 314
           TS PPP  STS+ G      +PS S           P G++ T V
Sbjct: 313 TSTPPPPASTSSTGTSS-SPLPSTST-SCTTSTSIPPTGNSTTPV 355


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 370 FCSSRHILIFSGSSR 326
           F SS HI++F+G++R
Sbjct: 430 FTSSEHIVVFAGTNR 444


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 57   PKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAG 161
            PKA  ++ D  DS V+ EVD +  + +++     G
Sbjct: 1798 PKAIFRLHDQDDSGVQLEVDRSVSWSSKDWTPFNG 1832


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 374 FFLFFSPYFDLLRFLTFLF 318
           FF FF  YF L  F +FLF
Sbjct: 107 FFCFFF-YFSLFSFFSFLF 124


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 302 SGSQWSIIQQTVSIKC*CTG 243
           S ++WS++++T+ +K  C G
Sbjct: 29  SVTEWSVLEETLLLKAICRG 48


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 177 ETSAPPPAISTSTNGFDDFVEVPSASA 257
           ET+APPP  + + +   +  + PSA A
Sbjct: 173 ETAAPPPQETPTKSADAELAKTPSAPA 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,614
Number of Sequences: 5004
Number of extensions: 31961
Number of successful extensions: 121
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)