Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k22f
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 30 0.52
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 29 0.90
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 28 2.7
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981... 27 3.6
02_05_1247 + 35233756-35233785,35234902-35236107 27 3.6
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 27 4.8
02_05_0591 - 30183105-30183869 27 4.8
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 27 6.3
05_01_0601 + 5390484-5391692 27 6.3
03_05_0312 - 23019662-23020093 27 6.3
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 27 6.3
01_02_0048 - 10626467-10627498,10628522-10628617 27 6.3
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 26 8.4
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 26 8.4
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 30.3 bits (65), Expect = 0.52
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 78 DDFGDSFVEPEVDPAADFLAREQNQLAGLEDE---LETSAPPP 197
++ GD EPE + ADF+ E+ + LEDE E AP P
Sbjct: 56 EEGGDDEAEPEDESDADFVGDEEEEEEDLEDEDDLEEVKAPRP 98
>06_03_0038 - 15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 29.5 bits (63), Expect = 0.90
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 12 QRVLKIYSHSVN*FVPKAYLKMDDFGDSFVE-PEVDPAAD----FLAREQNQLAGLEDEL 176
Q+VLK S F+PK + K ++ FV+ P++ P ++ ++ R + G D+L
Sbjct: 871 QKVLKRLSDGFQSFMPKVFKKFGNYHREFVKCPKMVPCSNDCAVYVIRYMERYQGNPDKL 930
Query: 177 ETSAPPP 197
PP
Sbjct: 931 ADDFQPP 937
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 12 QRVLKIYSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDE 173
Q ++++ S + N P L + DF +F+ ++ P +L R Q L+DE
Sbjct: 193 QNLVQLRSTAHNGLCPSPRLNVGDFSYNFLVGKIPPCLKYLPRSSFQGNCLQDE 246
>08_02_1331 +
26195949-26196132,26196606-26196710,26197270-26198127,
26198669-26199458,26200240-26200329,26200636-26200712,
26200797-26201383
Length = 896
Score = 27.5 bits (58), Expect = 3.6
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 90 DSFVEPEVDPAAD-FLA--REQNQLA-GLEDELETSAPPPAISTSTNGFDDFVEV 242
DS + PE DPA+ F++ RE+N LA G +DE SA P +ST V+V
Sbjct: 435 DSLI-PE-DPASQSFVSPLREENALASGSDDEKNDSAVQPEVSTEAKRTTSSVKV 487
>02_05_1247 + 35233756-35233785,35234902-35236107
Length = 411
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 90 DSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAI-STSTN 218
D FV PEV E+ + E T+A PA+ +TSTN
Sbjct: 288 DQFVRPEVVVIQVITGAEEEGAQAPQQEANTAASDPAVDATSTN 331
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 105 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 230
P+ DP+ + L ++ L +E PPP +T+TN DD
Sbjct: 222 PQADPSVELLVNFRHGLK-VETNGLAPPPPPPPTTTTNFHDD 262
>02_05_0591 - 30183105-30183869
Length = 254
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +3
Query: 63 AYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVE 239
A+ K+ D ++ V F+ E N+ E +A + S GFDD+VE
Sbjct: 52 AHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVE 110
>07_03_1781 + 29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 90 DSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDAN 269
+S VEP + D + ++DE+ APPPA STS E A F+ +
Sbjct: 923 ESLVEPSIPDPDDPIEELSIDDIDIDDEIPL-APPPASSTSHVNKKTTAEEERAKLFEGS 981
>05_01_0601 + 5390484-5391692
Length = 402
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 352 ILIFSGSSRSCLNTVVGVDPNGASSNRPLASNADAL 245
+L+ SSR L GV NGA+S+ P + +AL
Sbjct: 8 LLLLLSSSRLALAAAFGVWINGAASSSPQSQEYEAL 43
>03_05_0312 - 23019662-23020093
Length = 143
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 96 FVEPEVDPAADFLAREQNQLAGLEDELETSAPPP 197
FV+P +P D ++ + L +E ++PPP
Sbjct: 14 FVDPTHNPTTDATLQQDEHESDLPEEFGVTSPPP 47
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 72 KMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAI 203
K+++ ++ +E +V+P A A + + LA L L PP A+
Sbjct: 653 KVENIPETNIESKVEPPAAHPASQADLLADLLGPLAIEGPPAAV 696
>01_02_0048 - 10626467-10627498,10628522-10628617
Length = 375
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 117 PAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSAS 254
P ++ L E N L + L+ +APPP+ + T G D E+ A+
Sbjct: 301 PPSENLPSEGN-LVAMAMGLDLNAPPPSPAADTIGVGDVAEMTMAA 345
>07_03_1342 -
25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 26.2 bits (55), Expect = 8.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 147 NQLAGLEDE--LETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFK 320
N L+G+ E L+ S + S NGF V V +++ L + GS P+TV K
Sbjct: 281 NALSGVMPEAMLQNSMRLVEVDLSRNGFSGSVPVVNSTTLKLLNLSSNTFSGSLPSTVGK 340
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 26.2 bits (55), Expect = 8.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 201 ISTSTNGFDDFVEVPSASAF 260
+S+ +G+DDFV+VP+ AF
Sbjct: 384 MSSVKDGWDDFVDVPATIAF 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,969,968
Number of Sequences: 37544
Number of extensions: 200421
Number of successful extensions: 709
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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