Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k22f
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.22 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.22 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.39 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   8.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   8.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.22
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 120 AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 236
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 229 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 267


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.22
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 120 AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 236
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 319 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 357


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.39
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 211 LQTGLTILSKYPVHQ--HLMLTVCWMMLHWDPLQQQYSNKN---VRNLR 342
           L  GLT++    V +   L++T  W+ L W+ +  +++  +   VR+LR
Sbjct: 51  LSFGLTLMQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLR 99


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 132 LAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVE 239
           L R Q     LED++E      ++     G D F +
Sbjct: 184 LGRFQTTSQNLEDDVEIKVQVESVIEFEPGLDSFTQ 219


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 316 SNKNVRNLRRSKYGEKNK 369
           SNK + N    KY   NK
Sbjct: 86  SNKTIHNNNNYKYNYNNK 103


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 129 FLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEV 242
           F ARE N     +   E   PP   +   + F++ VE+
Sbjct: 135 FAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVEI 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,671
Number of Sequences: 438
Number of extensions: 2108
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)