Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k20f
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    31   0.18 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   3.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   5.2  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   9.1  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    25   9.1  

>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 467 LTNRPAFAVSSKFVKLSAIFSTLVGFR--LSNLLLNPSVHSRCIITDATFTPLQTSY*SG 294
           +++ P F  S KFV L+ + + L  ++  LS+LL+     S+C+   +TF  L   Y   
Sbjct: 99  ISSDPYFVGSGKFVSLAQLEAHLADWKETLSSLLVLQGNISQCLSVASTFQKLHNMYMGS 158

Query: 293 VYHDTRKV 270
            + + +K+
Sbjct: 159 THLNFKKL 166


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 501 AIPTPYL--RVRTSYKSTSLRSLIQVREALCYL*HFGRLPPLELTPKSFCT 355
           ++PTP L   V T+   TS ++         Y  HF +L PL  TP    T
Sbjct: 460 SLPTPLLGRAVNTTAFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTPPGILT 510


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 167 ESDSQRLFLCEYNVISHIYKYRPFVSVVDLKNESVL 274
           ++    L  C Y++    Y   PFV V DL+N S L
Sbjct: 214 DTSGNLLLSCGYSLRHGTYMLDPFVKVWDLRNLSSL 249


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 512 SCPSRYLRPIFECGPLTN 459
           +CP +Y+R    C P TN
Sbjct: 201 NCPPKYVRSTINCVPTTN 218


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 514 RTKRGVVCCDDEC 552
           RT RGVV CD EC
Sbjct: 211 RTLRGVVSCDIEC 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,306
Number of Sequences: 5004
Number of extensions: 43026
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)