Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k20f
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0747 - 26867114-26867225,26868443-26868531,26869342-268693...    29   4.1  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    27   9.4  
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998...    27   9.4  

>11_06_0747 -
           26867114-26867225,26868443-26868531,26869342-26869380,
           26869819-26870077,26870157-26870327,26870410-26870451,
           26870896-26871242,26871324-26871785,26871864-26872597,
           26872686-26872815
          Length = 794

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 459 STSLRSLIQVREALCYL*HFGRLPPLELTPKSFCTLALH 343
           ST LR ++QV + +  +   GR    ++ PK  CT+ALH
Sbjct: 710 STLLREVVQVDDIMALIHLLGRNSD-KIIPKQNCTVALH 747


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 420 ELHELG*--DCEGWSICKRSALEDR 488
           ++H+LG   D   WS+C+ +AL+DR
Sbjct: 334 KIHQLGYLTDTTCWSVCRNAALQDR 358


>02_02_0415 -
           9981345-9981440,9981716-9981784,9982035-9982155,
           9982441-9982622,9983320-9984921
          Length = 689

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 439 ETAKAGRFVRGPHSKIGRRYRDGQERTKRG 528
           E   AGR  RG H    R +R G++R  RG
Sbjct: 78  EAGTAGRHGRGRHGGGARPWRRGEDRPARG 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,852
Number of Sequences: 37544
Number of extensions: 260270
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)