Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k20f
         (633 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036890-1|AAH36890.1|  555|Homo sapiens GRHL3 protein protein.        37   0.052
AY231160-1|AAO67370.1|  607|Homo sapiens sister-of-mammalian gra...    37   0.052
AL138902-3|CAM12854.1|  556|Homo sapiens grainyhead-like 3 (Dros...    37   0.052
AL138902-2|CAI22857.2|  607|Homo sapiens grainyhead-like 3 (Dros...    37   0.052
AL137763-1|CAB70911.1|  117|Homo sapiens hypothetical protein pr...    37   0.052
AL031431-3|CAM12855.1|  556|Homo sapiens grainyhead-like 3 (Dros...    37   0.052
AL031431-2|CAI21406.2|  607|Homo sapiens grainyhead-like 3 (Dros...    37   0.052

>BC036890-1|AAH36890.1|  555|Homo sapiens GRHL3 protein protein.
          Length = 555

 Score = 37.1 bits (82), Expect = 0.052
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -3

Query: 367 ILLYTR-----VALSLMLRSPRFKHHINQVSTTIREKYTLIFQVHYTYERTVLVNMRNNI 203
           +LLY R     V  +LML++P  K   N +S         I++V+   +R +LVNM NNI
Sbjct: 468 VLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 527

Query: 202 IFTQKKTLTVTFTIDLGLL 146
           I  Q  +  V F +D+G L
Sbjct: 528 I--QHYSNHVAFLLDMGEL 544


>AY231160-1|AAO67370.1|  607|Homo sapiens sister-of-mammalian
           grainyhead isoform 1 protein.
          Length = 607

 Score = 37.1 bits (82), Expect = 0.052
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -3

Query: 367 ILLYTR-----VALSLMLRSPRFKHHINQVSTTIREKYTLIFQVHYTYERTVLVNMRNNI 203
           +LLY R     V  +LML++P  K   N +S         I++V+   +R +LVNM NNI
Sbjct: 520 VLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 579

Query: 202 IFTQKKTLTVTFTIDLGLL 146
           I  Q  +  V F +D+G L
Sbjct: 580 I--QHYSNHVAFLLDMGEL 596


>AL138902-3|CAM12854.1|  556|Homo sapiens grainyhead-like 3
           (Drosophila) protein.
          Length = 556

 Score = 37.1 bits (82), Expect = 0.052
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -3

Query: 367 ILLYTR-----VALSLMLRSPRFKHHINQVSTTIREKYTLIFQVHYTYERTVLVNMRNNI 203
           +LLY R     V  +LML++P  K   N +S         I++V+   +R +LVNM NNI
Sbjct: 469 VLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 528

Query: 202 IFTQKKTLTVTFTIDLGLL 146
           I  Q  +  V F +D+G L
Sbjct: 529 I--QHYSNHVAFLLDMGEL 545


>AL138902-2|CAI22857.2|  607|Homo sapiens grainyhead-like 3
           (Drosophila) protein.
          Length = 607

 Score = 37.1 bits (82), Expect = 0.052
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -3

Query: 367 ILLYTR-----VALSLMLRSPRFKHHINQVSTTIREKYTLIFQVHYTYERTVLVNMRNNI 203
           +LLY R     V  +LML++P  K   N +S         I++V+   +R +LVNM NNI
Sbjct: 520 VLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 579

Query: 202 IFTQKKTLTVTFTIDLGLL 146
           I  Q  +  V F +D+G L
Sbjct: 580 I--QHYSNHVAFLLDMGEL 596


>AL137763-1|CAB70911.1|  117|Homo sapiens hypothetical protein
           protein.
          Length = 117

 Score = 37.1 bits (82), Expect = 0.052
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -3

Query: 367 ILLYTR-----VALSLMLRSPRFKHHINQVSTTIREKYTLIFQVHYTYERTVLVNMRNNI 203
           +LLY R     V  +LML++P  K   N +S         I++V+   +R +LVNM NNI
Sbjct: 30  VLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 89

Query: 202 IFTQKKTLTVTFTIDLGLL 146
           I  Q  +  V F +D+G L
Sbjct: 90  I--QHYSNHVAFLLDMGEL 106


>AL031431-3|CAM12855.1|  556|Homo sapiens grainyhead-like 3
           (Drosophila) protein.
          Length = 556

 Score = 37.1 bits (82), Expect = 0.052
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -3

Query: 367 ILLYTR-----VALSLMLRSPRFKHHINQVSTTIREKYTLIFQVHYTYERTVLVNMRNNI 203
           +LLY R     V  +LML++P  K   N +S         I++V+   +R +LVNM NNI
Sbjct: 469 VLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 528

Query: 202 IFTQKKTLTVTFTIDLGLL 146
           I  Q  +  V F +D+G L
Sbjct: 529 I--QHYSNHVAFLLDMGEL 545


>AL031431-2|CAI21406.2|  607|Homo sapiens grainyhead-like 3
           (Drosophila) protein.
          Length = 607

 Score = 37.1 bits (82), Expect = 0.052
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = -3

Query: 367 ILLYTR-----VALSLMLRSPRFKHHINQVSTTIREKYTLIFQVHYTYERTVLVNMRNNI 203
           +LLY R     V  +LML++P  K   N +S         I++V+   +R +LVNM NNI
Sbjct: 520 VLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 579

Query: 202 IFTQKKTLTVTFTIDLGLL 146
           I  Q  +  V F +D+G L
Sbjct: 580 I--QHYSNHVAFLLDMGEL 596


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,615,166
Number of Sequences: 237096
Number of extensions: 1472836
Number of successful extensions: 2846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2846
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)