Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k20f
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic mul...    28   6.4  
AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell...    28   6.4  
U40934-7|AAA81685.1|  168|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic
           multivulva protein LIN-35 Rb protein.
          Length = 961

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 394 PTKVLKIAESF--TNLDETAKAGRFVRGPHSKIGRRYRDGQERTKRGV-VCC 540
           P  +L IA SF  +  +   K  RFV   HS+  RRY++   R + G+ V C
Sbjct: 199 PVSILTIANSFDISVAEMLDKTARFVEIIHSRKIRRYQEYIRRIQEGLAVSC 250


>AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell
           lineage protein 35 protein.
          Length = 961

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 394 PTKVLKIAESF--TNLDETAKAGRFVRGPHSKIGRRYRDGQERTKRGV-VCC 540
           P  +L IA SF  +  +   K  RFV   HS+  RRY++   R + G+ V C
Sbjct: 199 PVSILTIANSFDISVAEMLDKTARFVEIIHSRKIRRYQEYIRRIQEGLAVSC 250


>U40934-7|AAA81685.1|  168|Caenorhabditis elegans Hypothetical
           protein F35H10.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 295 VSTTIREKYTLIFQVHYTYERTVLVNMRNNIIF 197
           V T IREKY+  F + + Y+R  + + R++ ++
Sbjct: 123 VVTAIREKYSANFYISHIYQRCRVTSKRHHRLY 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,706
Number of Sequences: 27780
Number of extensions: 241952
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)