Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k19r
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 182 4e-46
01_06_0663 - 30991390-30992340 92 5e-19
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 89 3e-18
05_07_0134 - 27911920-27912762 73 2e-13
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 70 2e-12
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 65 5e-11
06_03_0219 - 18227559-18227858,18227864-18228340 35 0.083
02_01_0384 - 2781362-2782299,2782320-2782428 33 0.25
12_02_0842 - 23588826-23589198,23589548-23590203 32 0.44
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801... 31 1.0
06_01_0080 + 644021-645463 31 1.3
07_01_0885 + 7353926-7354770,7354845-7355487 30 1.8
07_03_1086 + 23858419-23859423,23859527-23859610 29 4.1
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 29 5.4
12_01_0849 + 7948693-7948996,7949829-7950610 28 7.2
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 28 7.2
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 28 9.5
01_05_0631 + 23835120-23836109,23836204-23836674 28 9.5
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 182 bits (442), Expect = 4e-46
Identities = 102/238 (42%), Positives = 143/238 (60%), Gaps = 12/238 (5%)
Frame = -2
Query: 680 LTSNKVVLDVYLGKDGVVAHAK-KGS-LLIDSSTIDPNVPKQIFP----IALEKGLGFT- 522
L S+ VLDVY G++G++A+ G L IDSST+DP ++I L++ +
Sbjct: 50 LPSSAHVLDVYNGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAE 109
Query: 521 -----DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKL 357
DAPVSGGV A+ L FM GG +E + + PLL MG K +CG G+G VAK+
Sbjct: 110 KPMMLDAPVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVAKI 169
Query: 356 TNNMLMGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSS 177
NNM M I+ + +E +G +G++ VL D+ N SSAR WS++ Y PVPG++ PSS
Sbjct: 170 CNNMAMAISMLGVSEAFALGQNLGIKASVLTDIFNCSSARCWSSDTYNPVPGVMMDVPSS 229
Query: 176 RNYDGGFKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 3
RNYDGGF ++LM KDL+LA A G+ P G+ A ++YR + + G KDFS F+
Sbjct: 230 RNYDGGFTSKLMTKDLDLAMASASGVGFNCPFGSQALEIYRKLCADGCELKDFSCAFR 287
>01_06_0663 - 30991390-30992340
Length = 316
Score = 91.9 bits (218), Expect = 5e-19
Identities = 67/202 (33%), Positives = 95/202 (47%)
Frame = -2
Query: 635 GVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGG 456
G +A G LL+D +T DP + +I A K DAPVSGG GA++ATL+ AGG
Sbjct: 99 GALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAKSCAAVDAPVSGGDRGARSATLSIFAGG 158
Query: 455 RKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKMGLEP 276
R PL K+MG + G G+GQ AKL N + + T + E M K GL+
Sbjct: 159 DAAVVARLAPLFKLMG-NALYMGGPGAGQRAKLGNQIAIASTMVGLVEGMVYAHKAGLDV 217
Query: 275 KVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIR 96
L+ ++ +A S S ++Y R+ GF VKDL + +
Sbjct: 218 AKWLEAISTGAAGSKSLDLY-------GKRMLERDMAAGFYVRHFVKDLGICLSECQAMG 270
Query: 95 SPIPLGAVATQLYRIVQSRGYG 30
+P A+A QLY + + G G
Sbjct: 271 LALPGLALAHQLYVSLLAHGEG 292
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 89.4 bits (212), Expect = 3e-18
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 2/182 (1%)
Frame = -2
Query: 542 EKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVA 363
+KG F +APVSG A++ L +A G K ++ +P V+G K F G+IG+G
Sbjct: 110 QKGGAFVEAPVSGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKM 169
Query: 362 KLTNNMLMGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAP 183
KL NM+MG A +E +++ GL P+ LLDVL+ + + P+ L +
Sbjct: 170 KLVVNMIMGSMMNALSEGLSLADNSGLSPQTLLDVLDLGAIAN-------PMFKLKGPSM 222
Query: 182 SSRNYDGGFKNELMVKDLELASGMALGIRSPI--PLGAVATQLYRIVQSRGYGQKDFSFV 9
+Y+ F + KD+ LA +ALG + + P+ A + + ++ +S G G DFS V
Sbjct: 223 LQGSYNPAFPLKHQQKDMRLA--LALGDENAVSMPVAAASNEAFKKARSLGLGDLDFSAV 280
Query: 8 FQ 3
++
Sbjct: 281 YE 282
>05_07_0134 - 27911920-27912762
Length = 280
Score = 73.3 bits (172), Expect = 2e-13
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Frame = -2
Query: 665 VVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQ 486
VVLD GV+A + G +L+D ++ P++ +++ A G D+PVSGG +GA+
Sbjct: 59 VVLDA---ASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGAR 115
Query: 485 NATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECM 306
+ LA +AGG + PL +G + + G GSGQ +K+ N + + + +E +
Sbjct: 116 DGALALLAGGDEAVVSWLAPLFAHLG-RPTYMGPPGSGQSSKIANQIAVAGAVVGASEAL 174
Query: 305 NMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 126
GL+ + LD ++ +A S +++ R + G + ++KDL
Sbjct: 175 AFANAAGLDAPLFLDAVSKGAAGSRVMDIF-------GERMLRREFASGGSVKYIIKDLG 227
Query: 125 LASGMALGIR--SPIPLGAVATQLYRIVQSRGYG 30
+A G +P A+ Q++ + + G G
Sbjct: 228 MALETEEGPEGAKALPGAAMFRQMFSAMAANGDG 261
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 70.1 bits (164), Expect = 2e-12
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 2/228 (0%)
Frame = -2
Query: 680 LTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTD-APVSG 504
L + ++V G +G G +D ST+D K I G F + S
Sbjct: 114 LADPESAVEVACGANGAAQGMAPGKGYVDVSTVDAATSKLIGKHITSTGASFLERCDFSS 173
Query: 503 GVMGAQNATLAFMA-GGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITG 327
+G F + + ++ + + +F G +G G KL NM+MG
Sbjct: 174 CTVGPMLTRYLFSRLQFQAQKSQQKMGCSSFLPQSRFFLGDVGKGADMKLVVNMVMGSMM 233
Query: 326 MATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNE 147
++ +E + + K+GL+P L++V++ + + P+ L + Y F +
Sbjct: 234 VSFSEGLLLSEKVGLDPNTLVEVISQGA-------ISAPMFSLKGPSMVKAAYPTAFPLK 286
Query: 146 LMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVFQ 3
KDL LA +A + IP A A +LY++ +S G +DFS V +
Sbjct: 287 HQQKDLRLALALAESVSQSIPTVAAANELYKVAKSLGLADQDFSAVIE 334
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 65.3 bits (152), Expect = 5e-11
Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 4/224 (1%)
Frame = -2
Query: 680 LTSNKVVLD-VYLGKDGVVAHAKKGSLLIDSSTIDPN-VPKQIFPIALE-KGLGFTDAPV 510
+ +N+V + V G G V+ G+ +I SST+ P V K + E + + DAPV
Sbjct: 386 MVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVSPGFVIKLKERLEAECRDIKLVDAPV 445
Query: 509 SGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHC-GQIGSGQVAKLTNNMLMGI 333
SGGV A TL +K + S+ + + K + G G+ K+ N +L G+
Sbjct: 446 SGGVKRAAEGTLT--TNMQKLVHDCSIFYVTALSEKLYVIKGGCGAASSVKMVNQLLAGV 503
Query: 332 TGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFK 153
+ AE M G ++ L + L +++ ++ SW VP ++ +Y
Sbjct: 504 HIASAAEAMAFGARLNLRTRRLFEIIQHARGYSWMFGNR--VPHML-----DNDYTPYSA 556
Query: 152 NELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKD 21
++ VKDL + S + R P+ + ++A QL+ + G+G+ D
Sbjct: 557 VDIFVKDLGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFD 600
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 34.7 bits (76), Expect = 0.083
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = +1
Query: 322 AIPVMPINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMT 501
++PV+PI+ L V+L + P P C A T+RR S PP R+A P
Sbjct: 56 SLPVVPIH-LPVALLSLPRCRPPPAACAAS-TVRRPAAPSPPPASPPPPPPRLALRFPRR 113
Query: 502 PPDTGASVNPSPFS 543
PP+ PS FS
Sbjct: 114 PPELPPRRRPSRFS 127
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/74 (31%), Positives = 30/74 (40%)
Frame = +1
Query: 358 SLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSP 537
S A P P++ +T R LS ++ PA +R P +PP GAS P
Sbjct: 180 SSAIPPPATAPRFPPPRAMTARTALALSPTTSASPASPSRTRLAPPRSPPAGGASGAPRR 239
Query: 538 FSRAIGKICLGTFG 579
S A C G G
Sbjct: 240 SSSAASPSCAGVEG 253
>12_02_0842 - 23588826-23589198,23589548-23590203
Length = 342
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +1
Query: 178 LDGAVGTSPGTGQYTSVDQERADELFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLV 357
LDG G G+Y + ++ AD+L + +R ++PIL P S + + + L
Sbjct: 128 LDGDERGCAG-GRYDWLLEDFADKLVNDHHRRMMAAPILPPWMSSSPSSSSSPSVTLSLA 186
Query: 358 SLATCPEPICP 390
S A P P P
Sbjct: 187 SAAVAPAPAAP 197
>03_02_0386 +
8009884-8010133,8010274-8010338,8010545-8010658,
8010736-8010895,8010975-8011093,8011209-8011635,
8011834-8012057,8012863-8012973,8013056-8013188,
8013259-8013365,8013430-8013444,8013482-8013571,
8013855-8013917,8013973-8014053,8014136-8014208,
8014312-8014367,8014460-8014554,8014649-8014683,
8015449-8015525
Length = 764
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = -2
Query: 314 ECMNMGIKMGLEPKVLLDV-LNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMV 138
+C++MG++ G PK+ +DV L + R +V + L+ R+YDG + E M
Sbjct: 484 KCIDMGMEFGTLPKMDVDVPLTSLHIRRTLLDVPKKIDILIVIMADDRSYDG--EIEEMC 541
Query: 137 KDLELASGMALGIRSPIPLGAVATQL-YRIVQS 42
+ L + L S L VA Q+ ++V+S
Sbjct: 542 ESLRIVYVFCLPCLSKRNLKRVARQIQLKVVKS 574
>06_01_0080 + 644021-645463
Length = 480
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Frame = -2
Query: 632 VVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGR 453
+ AH ++G +ID ++ E+GL + VSGG GA+N + M GG
Sbjct: 90 LAAHLEQGDCIIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEEGARNGP-SLMPGGS 148
Query: 452 KEDFERSLP-LLKV------MGAKQFHCGQIGSGQVAKLTNN 348
E ++ LLKV G + G+ GSG K+ +N
Sbjct: 149 FEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGNFVKMVHN 190
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 248 SSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 126
S+ R W E+YCPV ++ P+ + D + L + LE
Sbjct: 216 SAIRLWKVELYCPVVAMIMEHPAHQTKDEKLQFSLNYQHLE 256
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 639 RWRCGSCEKRIASDRFEYNRSECSQTDLPYSPRERAGIHR 520
R R SC SEC DL ++P AGIHR
Sbjct: 10 RRRSTSCYSDSGDSSCSEPFSECGSDDLSFTPAAAAGIHR 49
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 492 THDSSRYRCICESQPFL*GYREDLFGNIRIYC 587
+H +S Y + E L +DL GNIR+YC
Sbjct: 370 SHAASGYHKVLEENRKLYNQIQDLRGNIRVYC 401
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 644 PGTRRARLYCWSIWKRPRRLHQRLQQWXGWRH-SVLGR 754
P RR L C W RP +H R QQW +RH SV GR
Sbjct: 151 PPLRRPALCC--PW-RPLEVHPRRQQWR-YRHCSVFGR 184
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 391 QWNCLAPITLRRG-RDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 549
+W+ AP+ G R+ + L PP A P PP A PSPF A
Sbjct: 236 RWSRAAPLPPHNGERERPRLVLDPPKRDASAT---PTPPPAEAARSRPSPFGAA 286
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +3
Query: 435 PFEVFFTTSGHEGQGSVLSTHDSSRYRCI--CESQPFL*GYREDLFGNIRIYCTRIDQKR 608
P++ + H GQG+ + H+ + + I +S+ + G R+ L + T +D+
Sbjct: 1161 PYDQYTEGCSHSGQGTAIPPHEHAMQKSIPRLKSKLHIEGSRDQLRQWTELLSTHLDELT 1220
Query: 609 SFFRMSHNAIFAQVH---VEHDFIAGQYG 686
+ +N+ + + EHD + YG
Sbjct: 1221 ITDPLFYNSKYLEEESTVSEHDSLESIYG 1249
>01_05_0631 + 23835120-23836109,23836204-23836674
Length = 486
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 576 RIYCTRIDQKRSF-FRMSHNAIFAQVHVEHDFIAGQYGNDHVDSINGCSNGXAG 734
R+ +R+D+ +S F M A VH +F D+ S NG NG G
Sbjct: 92 RLRVSRVDETKSMMFSMEEGEEMADVHEGSEFRWRLVCRDNSSSSNGNGNGRGG 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,160,096
Number of Sequences: 37544
Number of extensions: 618422
Number of successful extensions: 1980
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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