Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k19r
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-8|CAB03798.1|  299|Caenorhabditis elegans Hypothetical pr...   194   4e-50
AL031630-23|CAA21003.1|  299|Caenorhabditis elegans Hypothetical...   194   4e-50
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical...    29   4.8  
EF473218-1|ABQ42570.1|  765|Caenorhabditis elegans Y55D9A.1c pro...    28   6.4  
EF473217-1|ABQ42569.1|  818|Caenorhabditis elegans Y55D9A.1b pro...    28   6.4  
AL032649-5|CAM82814.1|  765|Caenorhabditis elegans Hypothetical ...    28   6.4  
AL032649-2|CAC70120.1|  818|Caenorhabditis elegans Hypothetical ...    28   6.4  
AL032649-1|CAA21701.1|  816|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore...    28   8.5  
AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore...    28   8.5  

>Z81453-8|CAB03798.1|  299|Caenorhabditis elegans Hypothetical
           protein B0250.5 protein.
          Length = 299

 Score =  194 bits (474), Expect = 4e-50
 Identities = 101/228 (44%), Positives = 139/228 (60%), Gaps = 2/228 (0%)
 Frame = -2

Query: 680 LTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGG 501
           L S+  V  VY G+ G+    + G+L +DSSTID  V  ++   A      + DAP+SGG
Sbjct: 65  LPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGG 124

Query: 500 VMGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGM 324
           V GAQ ATL FM G G    F+R+  +L +MG    + G +G+G  AK+ NNML+GI  +
Sbjct: 125 VTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMV 184

Query: 323 ATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNEL 144
           A AE MN+GI MGL+ K L  ++N SS R WS++ Y PVPG++   PS R Y GGF   L
Sbjct: 185 AVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGFGTTL 244

Query: 143 MVKDLELASGMALGIRSPIPLGAVATQLYRIV-QSRGYGQKDFSFVFQ 3
           M KDL LA   +   ++P P+G++A Q+YRI+ +   Y  KDF  V+Q
Sbjct: 245 MAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQ 292


>AL031630-23|CAA21003.1|  299|Caenorhabditis elegans Hypothetical
           protein B0250.5 protein.
          Length = 299

 Score =  194 bits (474), Expect = 4e-50
 Identities = 101/228 (44%), Positives = 139/228 (60%), Gaps = 2/228 (0%)
 Frame = -2

Query: 680 LTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGG 501
           L S+  V  VY G+ G+    + G+L +DSSTID  V  ++   A      + DAP+SGG
Sbjct: 65  LPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGG 124

Query: 500 VMGAQNATLAFMAG-GRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGM 324
           V GAQ ATL FM G G    F+R+  +L +MG    + G +G+G  AK+ NNML+GI  +
Sbjct: 125 VTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMV 184

Query: 323 ATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNEL 144
           A AE MN+GI MGL+ K L  ++N SS R WS++ Y PVPG++   PS R Y GGF   L
Sbjct: 185 AVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGFGTTL 244

Query: 143 MVKDLELASGMALGIRSPIPLGAVATQLYRIV-QSRGYGQKDFSFVFQ 3
           M KDL LA   +   ++P P+G++A Q+YRI+ +   Y  KDF  V+Q
Sbjct: 245 MAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQ 292


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +1

Query: 370  CPEPICPQWNCLAPITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 549
            C E ICPQ     P  +  GR  +    +PPA  +R         P T  +  P+P S+ 
Sbjct: 991  CEECICPQ-TAPTPPHVPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTTEAAPPAPSSQP 1049

Query: 550  IGKICLGT 573
              +  + T
Sbjct: 1050 PRQFAVNT 1057


>AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.2 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 337 PINMLLVSLATCPEPICPQWNCLAPITLRRGRDLSKSSLRPP 462
           P N LL+  A+     CP+ NC   ITL   RD   +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143


>EF473218-1|ABQ42570.1|  765|Caenorhabditis elegans Y55D9A.1c
           protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 250 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 417
           LF TSN+           F+ +A + P +P+ +      T P P  P+  CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661


>EF473217-1|ABQ42569.1|  818|Caenorhabditis elegans Y55D9A.1b
           protein.
          Length = 818

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 250 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 417
           LF TSN+           F+ +A + P +P+ +      T P P  P+  CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714


>AL032649-5|CAM82814.1|  765|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1c protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 250 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 417
           LF TSN+           F+ +A + P +P+ +      T P P  P+  CLAPIT
Sbjct: 607 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 661


>AL032649-2|CAC70120.1|  818|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1b protein.
          Length = 818

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 250 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 417
           LF TSN+           F+ +A + P +P+ +      T P P  P+  CLAPIT
Sbjct: 660 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 714


>AL032649-1|CAA21701.1|  816|Caenorhabditis elegans Hypothetical
           protein Y55D9A.1a protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 250 LFSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPIT 417
           LF TSN+           F+ +A + P +P+ +      T P P  P+  CLAPIT
Sbjct: 658 LFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPIT 712


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 155 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYG 30
           +++L++K++++ +G   GI    P G +  Q   +    GYG
Sbjct: 459 RDDLLIKNVKIQNGAGSGIDFMTPTGNIELQNIEVKNMGGYG 500


>AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform b protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -2

Query: 506 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 333
           GG+ G +    AF+  G +E F+     +  M   Q  +HC + G  + A  T N L   
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324

Query: 332 TGMAT 318
              AT
Sbjct: 325 PQCAT 329


>AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform a protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -2

Query: 506 GGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 333
           GG+ G +    AF+  G +E F+     +  M   Q  +HC + G  + A  T N L   
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324

Query: 332 TGMAT 318
              AT
Sbjct: 325 PQCAT 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,808,731
Number of Sequences: 27780
Number of extensions: 458111
Number of successful extensions: 1280
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)