Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k19f
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 79 4e-15
01_06_0663 - 30991390-30992340 76 2e-14
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 61 6e-10
05_07_0134 - 27911920-27912762 58 4e-09
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 46 3e-05
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 40 0.001
06_01_0080 + 644021-645463 37 0.011
02_01_0384 - 2781362-2782299,2782320-2782428 31 0.75
04_01_0035 - 433848-434372,434905-435381 31 1.00
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 29 2.3
07_03_1086 + 23858419-23859423,23859527-23859610 29 3.0
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 29 4.0
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 29 4.0
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 29 4.0
12_01_0518 - 4093206-4094955,4095357-4095810,4095966-4096236,409... 28 5.3
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 28 5.3
04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781 28 5.3
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 28 5.3
11_06_0743 + 26847652-26849424 28 7.0
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 28 7.0
10_08_0633 + 19446075-19446488,19446607-19446975,19447961-194480... 27 9.3
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 78.6 bits (185), Expect = 4e-15
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Frame = +3
Query: 177 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 356
MA NLV G+ V +D +++ + + +G+ S ++L S+ VLDVY
Sbjct: 1 MARNLVMAGYKVTVHDVNENTMKKFSDDGIPTKLSPLEVSKSSDVVITMLPSSAHVLDVY 60
Query: 357 LGKDGVVAHAK-KGS-LLIDSSTIDPNVPKQIFP----IALEKGLGFT------DAPVSG 500
G++G++A+ G L IDSST+DP ++I L++ + DAPVSG
Sbjct: 61 NGRNGLLANGGCLGPWLYIDSSTVDPQTSRKISMDISRCTLKEKKAYAEKPMMLDAPVSG 120
Query: 501 GVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGS 629
GV A+ L FM GG +E + + PLL MG K +CG G+
Sbjct: 121 GVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGN 163
>01_06_0663 - 30991390-30992340
Length = 316
Score = 76.2 bits (179), Expect = 2e-14
Identities = 53/163 (32%), Positives = 74/163 (45%), Gaps = 1/163 (0%)
Frame = +3
Query: 111 RAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXX 290
R S +T + VA++G G MG MA +L+ G+ + Y+ + G T A S
Sbjct: 13 RPISPDTTR-VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSRGATLAESPRA 71
Query: 291 XXXXXXXXXSILTSNKVVLDVYLGKD-GVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEK 467
++ V L G +A G LL+D +T DP + +I A K
Sbjct: 72 AAAAADVIFLMVGFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAK 131
Query: 468 GLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMG 596
DAPVSGG GA++ATL+ AGG R PL K+MG
Sbjct: 132 SCAAVDAPVSGGDRGARSATLSIFAGGDAAVVARLAPLFKLMG 174
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 61.3 bits (142), Expect = 6e-10
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Frame = +3
Query: 81 STQCLYTAARRA----YSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNA 248
++Q +Y A++ A + T K + F+GLG MG MA++L+K GF+V YD K L
Sbjct: 302 ASQQIYDASKLADQLVMACKTAKTIGFIGLGAMGFGMASHLLKSGFSVIAYDVYKPTLAR 361
Query: 249 AAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLD-VYLGKDGVVAHAKKGSLLIDSSTID 425
G +S I+ +N+V + V G G V+ G+ +I SST+
Sbjct: 362 FTDLGGLTKDS-PEEVSKDVEILVIMVANEVQAENVLYGNAGAVSVMAAGTSIILSSTVS 420
Query: 426 PN-VPKQIFPIALE-KGLGFTDAPVSGGVMGAQNATL 530
P V K + E + + DAPVSGGV A TL
Sbjct: 421 PGFVIKLKERLEAECRDIKLVDAPVSGGVKRAAEGTL 457
>05_07_0134 - 27911920-27912762
Length = 280
Score = 58.4 bits (135), Expect = 4e-09
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 1/152 (0%)
Frame = +3
Query: 177 MAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVY 356
MAA L+ GF V Y + A G + A S +++ + V V
Sbjct: 1 MAARLLAAGFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVFTMVGNPGDVRAVV 60
Query: 357 L-GKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLA 533
L GV+A + G +L+D ++ P++ +++ A G D+PVSGG +GA++ LA
Sbjct: 61 LDAASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGARDGALA 120
Query: 534 FMAGGRKEDFERSLPLLKVMGAKQFHCGQIGS 629
+AGG + PL +G + + G GS
Sbjct: 121 LLAGGDEAVVSWLAPLFAHLG-RPTYMGPPGS 151
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +3
Query: 462 EKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGS 629
+KG F +APVSG A++ L +A G K ++ +P V+G K F G+IG+
Sbjct: 110 QKGGAFVEAPVSGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGN 165
Score = 33.9 bits (74), Expect(2) = 0.001
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 141 VAFLGLGNMGGFMAANLVKKGFTV 212
V FLGLG MG MAANL++ GF V
Sbjct: 3 VGFLGLGIMGKAMAANLLRHGFRV 26
Score = 25.8 bits (54), Expect(2) = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 333 NKVVLDVYLGKDGVVAHAKKGSLLIDSSTID 425
N+ + V KDGV+ +G +D ST+D
Sbjct: 30 NRTLSKVVFDKDGVLEQIGEGKGYVDMSTVD 60
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 40.3 bits (90), Expect = 0.001
Identities = 33/140 (23%), Positives = 54/140 (38%)
Frame = +3
Query: 66 ARTILSTQCLYTAARRAYSSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALN 245
AR + S C +++ + V FLGLG MG MA+NL+ G V ++ ++ +
Sbjct: 30 ARLVFS--CSASSSSPSGEGGFSGKVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCD 87
Query: 246 AAAKNGVTPANSIXXXXXXXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTID 425
G S ++L + ++V G +G G +D ST+D
Sbjct: 88 PLLSLGAKYEPSPADVASSCDVTFAMLADPESAVEVACGANGAAQGMAPGKGYVDVSTVD 147
Query: 426 PNVPKQIFPIALEKGLGFTD 485
K I G F +
Sbjct: 148 AATSKLIGKHITSTGASFLE 167
>06_01_0080 + 644021-645463
Length = 480
Score = 37.1 bits (82), Expect = 0.011
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Frame = +3
Query: 141 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPAN-SIXXXXXXXXXXX 317
+ GL MG +A N+ +KGF + Y+ + ++ + N +
Sbjct: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPASFVN 65
Query: 318 SILTSNKVVLDVYLGKD------GVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGF 479
SI V++ V G + AH ++G +ID ++ E+GL +
Sbjct: 66 SIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERGLLY 125
Query: 480 TDAPVSGGVMGAQNATLAFMAGGRKEDFE 566
VSGG GA+N + M GG E ++
Sbjct: 126 LGMGVSGGEEGARNGP-SLMPGGSFEAYK 153
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 31.1 bits (67), Expect = 0.75
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -2
Query: 592 ITLRRGRDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRAIGKICLGTFG 425
+T R LS ++ PA +R P +PP GAS P S A C G G
Sbjct: 198 MTARTALALSPTTSASPASPSRTRLAPPRSPPAGGASGAPRRSSSAASPSCAGVEG 253
>04_01_0035 - 433848-434372,434905-435381
Length = 333
Score = 30.7 bits (66), Expect = 1.00
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Frame = +3
Query: 102 AARRAY---SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTP 272
AAR Y S + K+V +GLG++G +A L G T+ Y+ S+ ++ + N
Sbjct: 149 AARGDYPLGSKLSGKHVGIIGLGSIGSLIAKRLQAFGCTI-SYN-SRRPKDSVSYNYFPD 206
Query: 273 ANSIXXXXXXXXXXXSILTSNKVVLDVY----LGKDGVVAHAKKGSLLIDSSTI 422
+ ++ + ++D LGKDGVV + +G ++ ++ I
Sbjct: 207 VTDLAAASDVLIVACALNDETRHIVDSSVLEALGKDGVVVNIARGGIVDEAELI 260
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 177 MAANLVKKGFTVRGYDPSKDALN 245
+A L+K+G RGYD SKD+ N
Sbjct: 251 VARRLLKQGLPFRGYDESKDSYN 273
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 365 RWRCGSCEKRIASDRFEYNRSECSQTDLPYSPRERAGIHR 484
R R SC SEC DL ++P AGIHR
Sbjct: 10 RRRSTSCYSDSGDSSCSEPFSECGSDDLSFTPAAAAGIHR 49
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 512 THDSSRYRCICESQPFL*GYREDLFGNIRIYC 417
+H +S Y + E L +DL GNIR+YC
Sbjct: 370 SHAASGYHKVLEENRKLYNQIQDLRGNIRVYC 401
>10_08_0426 - 17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 212 NCETLFNQVRSHEPSHVSEAEESHILVG 129
N + + N V SH PSH SE E+ +L G
Sbjct: 1072 NSDKISNDVGSHSPSH-SERNEARVLTG 1098
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -3
Query: 390 FSHEPQRHLCPGTRRARLYCWSIWKRPRRLHQRLQQWSWL 271
F E + G A L WS W R R +H R Q W WL
Sbjct: 68 FMQEEGGKVFTGRMCATLPWWSTW-RGRWIHLRDQPWLWL 106
>12_01_0518 -
4093206-4094955,4095357-4095810,4095966-4096236,
4096308-4096628
Length = 931
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +3
Query: 3 VALRPRTRPHAKLRKNKFKMAARTILSTQCLYTAARRAYSSNTDKN 140
VAL T P A ++ +MAAR I +T+ L A RAY D N
Sbjct: 55 VALHVATPPAAADQEGAMRMAARRIRATESL-AALLRAYHDFCDLN 99
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 141 VAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVT 269
+A +G GN G F+A ++G T+ + S D + AA G +
Sbjct: 704 IAIVGFGNFGQFLARTFARQGHTLLAHSRS-DYSSLAASVGAS 745
>04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781
Length = 551
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 124 LTPTRMWLSSASETWEGSWLRTW 192
L P RMWL+S W+G TW
Sbjct: 523 LRPQRMWLASTVSGWDGLPRPTW 545
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 613 QWNCLAPITLRRG-RDLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRA 455
+W+ AP+ G R+ + L PP A P PP A PSPF A
Sbjct: 236 RWSRAAPLPPHNGERERPRLVLDPPKRDASAT---PTPPPAEAARSRPSPFGAA 286
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 342 RLYCWSIWKRPRRLHQRLQQWSWLAS-LRSWPLRS 241
R + W+ KR RL +RL+Q W+A+ +R + RS
Sbjct: 94 RRWSWTRGKRTPRLPERLKQRLWMANKIREFSTRS 128
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -1
Query: 569 PFEVFFTTSGHEGQGSVLSTHDSSRYRCI--CESQPFL*GYREDLFGNIRIYCTRIDQKR 396
P++ + H GQG+ + H+ + + I +S+ + G R+ L + T +D+
Sbjct: 1161 PYDQYTEGCSHSGQGTAIPPHEHAMQKSIPRLKSKLHIEGSRDQLRQWTELLSTHLDELT 1220
Query: 395 SFFRMSHNAIFAQVH---VEHDFIAGQYG 318
+ +N+ + + EHD + YG
Sbjct: 1221 ITDPLFYNSKYLEEESTVSEHDSLESIYG 1249
>10_08_0633 +
19446075-19446488,19446607-19446975,19447961-19448054,
19448137-19448174,19448770-19448916,19449580-19449679,
19449786-19450744,19451143-19451295
Length = 757
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 351 VYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATL 530
V +G DG+V G L D + +VP I P + L +T GV +A +
Sbjct: 295 VCVGGDGIVNEVLNGLLCRDDQNVAVSVPIGIIPAGSDNSLVWTVL----GVKDPISAAM 350
Query: 531 AFMAGG 548
+ + GG
Sbjct: 351 SIVRGG 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,285,588
Number of Sequences: 37544
Number of extensions: 487364
Number of successful extensions: 1508
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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