Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k16r
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    60   2e-09
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    58   5e-09
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    55   5e-08
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    53   2e-07
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    32   0.39 

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 32/77 (41%), Positives = 45/77 (58%)
 Frame = -3

Query: 673 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 494
           +Q A   K L    ++   L LY  +KQATVGD + A RPG+   + +AK+DAW  + G 
Sbjct: 8   EQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDAWKAVEGK 66

Query: 493 SKEDAQKAYIEIVEGLI 443
           SKE+A   YI  V+ L+
Sbjct: 67  SKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 31/76 (40%), Positives = 45/76 (59%)
 Frame = -3

Query: 673 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 494
           ++ A  VK L    ++   L LY  +KQATVGD +  +RPG+   + +AK+DAW  + G 
Sbjct: 8   EEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDAWKAVEGK 66

Query: 493 SKEDAQKAYIEIVEGL 446
           SKE+A   YI  V+ L
Sbjct: 67  SKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 30/79 (37%), Positives = 44/79 (55%)
 Frame = -3

Query: 679 KIDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLA 500
           + ++ A   K L    ++   L LY  +KQATVG      RPG+ +LK + K+DAW  + 
Sbjct: 6   EFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDAWKAVE 64

Query: 499 GTSKEDAQKAYIEIVEGLI 443
           G SKE+A   YI  V+ L+
Sbjct: 65  GKSKEEAMADYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = -3

Query: 664 AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 485
           AA+  +  ++P  AQL  LY  +K AT G    A +P  L LK +AK++AWHKL     E
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159

Query: 484 DAQKAYIEIVEGL 446
           +A + YI +V+ L
Sbjct: 160 EAMQKYITVVDEL 172


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 151 RKGRKLFHCCSILFFSTLEVPFINV 225
           R GRK   CC ILFF+   V F+NV
Sbjct: 418 RSGRKKSACCKILFFTIWNVFFVNV 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,259,718
Number of Sequences: 37544
Number of extensions: 327783
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)