Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k16f
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.7  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 531  HVLTLMNGTSRVLKNNIE 584
            +V T M G+   +KNN+E
Sbjct: 1134 NVTTFMEGSKATVKNNVE 1151


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 531  HVLTLMNGTSRVLKNNIE 584
            +V T M G+   +KNN+E
Sbjct: 1134 NVTTFMEGSKATVKNNVE 1151


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 525 NYHVLTLMNGTSRVLKNNIEQQ 590
           ++H  T+ NG   + +N I+QQ
Sbjct: 34  DFHESTMFNGGGEIPQNIIQQQ 55


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 226 KGK-AKFDAWHKLAGTSKEDAQKA 294
           +GK AK   W K+AG  +ED + A
Sbjct: 460 RGKNAKDVDWQKIAGAVEEDDEDA 483


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,490
Number of Sequences: 336
Number of extensions: 2784
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)