Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k15f
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 46 4e-06
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 46 4e-06
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 36 0.003
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 32 0.057
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.17
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 1.6
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 3.7
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 8.6
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 25 8.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.6
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 25 8.6
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 8.6
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 46.0 bits (104), Expect = 4e-06
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 109 STMP--FKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGE 282
ST P ++ C CG S+ A A G K H CFKC C + L+ EG+
Sbjct: 244 STKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGK 303
Query: 283 LYCKVCHARKF 315
YC + + +F
Sbjct: 304 FYCHLDYHEQF 314
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 142 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHA 306
KC KC K + + + G ++H C+ CG C LL E C+ C A
Sbjct: 377 KCKKCRKPILGISVKGSDG-EYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 46.0 bits (104), Expect = 4e-06
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 145 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 300
C KC +SV + + GG WH CFKC C K LD ++ + + +++CK+C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 145 CPKCGKSVYAAEERVA-GGLKWHKMCFKCGLCQKLLDSTN---CSEHEGELYCKVC 300
C +CG++ E ++ GG WHK CF C C K L+ ++ +G C C
Sbjct: 19 CFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 32.7 bits (71), Expect = 0.043
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +1
Query: 139 PKCPKCGKSVYAAEERV------AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVC 300
P C C + A R+ +G +H+ CF+C C+K + +N ++C C
Sbjct: 69 PVCSSCAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 32.3 bits (70), Expect = 0.057
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +1
Query: 145 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSE--HEGELYCKVCH 303
C CG A ++ ++ W K C CGL + + CSE G C+ CH
Sbjct: 107 CTTCG----AIDDHISVRCPWTKKCMNCGLLGHI--AARCSEPRKRGPRVCRTCH 155
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 112 TMPFKPADNPKCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYC 291
T+P P+C CG++ + A E G + C+ C Q ++ C+E + E C
Sbjct: 8 TVPQTTRPGPRCYNCGENGHQARECTKGSI-----CYNCN--QTGHKASECTEPQQEKTC 60
Query: 292 KVC 300
C
Sbjct: 61 YAC 63
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 202 KWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 303
K+H C CG C+ +S E+ ++CK C+
Sbjct: 65 KFHIPCVICGACK---NSLTVEEYRSTVHCKYCN 95
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 254 ESSNFWHRPHLKHILCHLRPP 192
E+SN++ P L+H LCH PP
Sbjct: 241 EASNYYVAP-LEHPLCHSAPP 260
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 163 SVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCS 267
SVY A+++ L+WH G+ L ST S
Sbjct: 189 SVYEAQQKRPFSLRWHTSLLSTGVALGLALSTKLS 223
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 299 HTLQYSSPSCSEQLVESSNFWHRPHLKHIL 210
HT + PSCS Q PH K ++
Sbjct: 253 HTFHATCPSCSHQCDTHMKLLDIPHFKEVI 282
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.6
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Frame = +2
Query: 11 TSRTAVSASPP*TVHASGSSTLVPTRRTG*VKRAQCLSNPLITRS---ARNVANQFTPLR 181
+S T V+++P T + + S++++ T S PL T + + +V TP+
Sbjct: 517 SSSTPVTSTPVTTTNCTTSTSVLYTS-------TPVTSTPLATTNCTTSTSVPYTSTPVT 569
Query: 182 SAWLVASNGTKCASNVVCAKNCWTQPTAQSTRVNCTAKCAMHANS 316
S+ S+ T S V NC T + T T+ + ++S
Sbjct: 570 SSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSS 614
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 494 KVQYGVRSRSTTGWPRCVSAIRN 426
K+Q + ++T WP+C+ I N
Sbjct: 32 KLQQAIHQFTSTCWPKCIGNIGN 54
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -1
Query: 488 QYGVRSRSTTGWPRCVSAIRNFC 420
+YG+++ + W +C IR +C
Sbjct: 50 KYGIQTGFSKYWKKCTYGIREYC 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,849
Number of Sequences: 5004
Number of extensions: 39627
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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