Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k14r
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    29   0.90 
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    27   2.8  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    27   3.6  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   6.4  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   8.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.4  
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.4  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 412 SLHFVKY*NTNGCLFCLW*PRNHLGANLSKTSTPMQYCIKQTILNYSFLCIKCSNIIIC 236
           ++HF K  N    +F      N+    L  +S     C+K  I N SF C KC +  +C
Sbjct: 32  NIHFTKENNLKSNIF----EHNNNSPTLRSSSVACNTCLK-IIRNDSFHCTKCFDFDVC 85


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 727 EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 617
           + +N D E   DD++++      +   +N+K+LK++N
Sbjct: 9   DDENYDFEFEDDDDDMIEPYVDVENCYYNSKSLKEEN 45


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 300 QYCIGVEVLDKFAPKWFLGYHKQNRQPL 383
           ++C  + ++ K    W   YHK NR P+
Sbjct: 181 EHCYPMSLIMKREDTWLRYYHKNNRNPI 208


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 721  DNEDVEMSSDDENVVVDSEGGKK 653
            + EDVEM S+D++   +SE G K
Sbjct: 1322 NEEDVEMRSEDQSDTSESEVGSK 1344


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 189 MRTSKLETLSVTNCT 233
           ++T KL++L +TNCT
Sbjct: 330 LKTEKLDSLQITNCT 344


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 195 FSYCCSLFTNLKYLLNIYIWLNVY 124
           F+YCCS+   L Y + ++  L  +
Sbjct: 596 FTYCCSIMLVLAYAIGLWFTLRTH 619


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 285 IVCFMQYCIGVEVLDKFAPKWFLG 356
           I CFM++ +G  V     P W LG
Sbjct: 45  IPCFMEFAVGSIVYSFGVPGWVLG 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,144
Number of Sequences: 5004
Number of extensions: 55057
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)