Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k14r
(731 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070232-1|AAH70232.1| 129|Homo sapiens chromosome 12 open read... 34 0.60
BC006002-1|AAH06002.1| 129|Homo sapiens chromosome 12 open read... 34 0.60
AK091568-1|BAC03699.1| 129|Homo sapiens protein ( Homo sapiens ... 34 0.60
BC107780-1|AAI07781.1| 129|Homo sapiens chromosome 12 open read... 33 1.4
U84551-1|AAB58543.1| 743|Homo sapiens dystrobrevin isoform DTN-... 31 4.3
U84547-1|AAB58542.1| 570|Homo sapiens dystrobrevin isoform DTN-... 31 4.3
U84540-1|AAB58541.1| 374|Homo sapiens dystrobrevin isoform DTN-... 31 4.3
U46745-1|AAC50430.1| 567|Homo sapiens dystrobrevin-beta protein. 31 4.3
U46744-1|AAC50429.1| 686|Homo sapiens dystrobrevin-alpha protein. 31 4.3
U26744-1|AAC50426.1| 513|Homo sapiens dystrobrevin-gamma protein. 31 4.3
U26742-1|AAC50424.1| 374|Homo sapiens dystrobrevin-delta protein. 31 4.3
BT006937-1|AAP35583.1| 371|Homo sapiens dystrobrevin, alpha pro... 31 4.3
BC005300-1|AAH05300.1| 371|Homo sapiens DTNA protein protein. 31 4.3
AJ009668-1|CAA08769.1| 374|Homo sapiens alpha-dystrobrevin-3 pr... 31 4.3
AB209102-1|BAD92339.1| 694|Homo sapiens dystrobrevin alpha isof... 31 4.3
>BC070232-1|AAH70232.1| 129|Homo sapiens chromosome 12 open reading
frame 31 protein.
Length = 129
Score = 33.9 bits (74), Expect = 0.60
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 715 EDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPVWLH 593
E ++ DE + E KR N KTL DQ+GQYP+W++
Sbjct: 60 EKMQCEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMN 98
>BC006002-1|AAH06002.1| 129|Homo sapiens chromosome 12 open reading
frame 31 protein.
Length = 129
Score = 33.9 bits (74), Expect = 0.60
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 715 EDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPVWLH 593
E ++ DE + E KR N KTL DQ+GQYP+W++
Sbjct: 60 EKMQCEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMN 98
>AK091568-1|BAC03699.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ34249 fis, clone FCBBF4000500. ).
Length = 129
Score = 33.9 bits (74), Expect = 0.60
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 715 EDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPVWLH 593
E ++ DE + E KR N KTL DQ+GQYP+W++
Sbjct: 60 EKMQCEVKDEKDDMKMETDIKR--NKKTLLDQHGQYPIWMN 98
>BC107780-1|AAI07781.1| 129|Homo sapiens chromosome 12 open reading
frame 31 protein.
Length = 129
Score = 32.7 bits (71), Expect = 1.4
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2
Query: 643 NTKTLKDQNGQYPVWLH 593
N KTL DQ+GQYP+W++
Sbjct: 82 NKKTLLDQHGQYPIWMN 98
>U84551-1|AAB58543.1| 743|Homo sapiens dystrobrevin isoform DTN-1
protein.
Length = 743
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>U84547-1|AAB58542.1| 570|Homo sapiens dystrobrevin isoform DTN-2
protein.
Length = 570
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>U84540-1|AAB58541.1| 374|Homo sapiens dystrobrevin isoform DTN-3
protein.
Length = 374
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>U46745-1|AAC50430.1| 567|Homo sapiens dystrobrevin-beta protein.
Length = 567
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>U46744-1|AAC50429.1| 686|Homo sapiens dystrobrevin-alpha protein.
Length = 686
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>U26744-1|AAC50426.1| 513|Homo sapiens dystrobrevin-gamma protein.
Length = 513
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>U26742-1|AAC50424.1| 374|Homo sapiens dystrobrevin-delta protein.
Length = 374
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>BT006937-1|AAP35583.1| 371|Homo sapiens dystrobrevin, alpha
protein.
Length = 371
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>BC005300-1|AAH05300.1| 371|Homo sapiens DTNA protein protein.
Length = 371
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>AJ009668-1|CAA08769.1| 374|Homo sapiens alpha-dystrobrevin-3
protein.
Length = 374
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 221 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 267
>AB209102-1|BAD92339.1| 694|Homo sapiens dystrobrevin alpha isoform
2 variant protein.
Length = 694
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 367 CL-W*PRNHLGANLSKTSTPMQ--YCIKQTILNYSFLCIKCSNIIIC 236
CL W P H AN+ P++ YC ++++ + + C +C N +C
Sbjct: 232 CLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLC 278
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,251,123
Number of Sequences: 237096
Number of extensions: 1723845
Number of successful extensions: 3019
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3013
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -