Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k14r
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    34   0.090
Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +2

Query: 584 LTFVQPNRVLSVLIFQSFRIKNSFLAAFTIDHNVFII*THFDVFIILF 727
           LT++ P  V+ + IF SFR  + + +A T++H++++I   + +F  LF
Sbjct: 29  LTYMTPTIVVMLKIFMSFRGPSHWNSAHTMNHHIYVIIMLYFLFNTLF 76


>Z72505-1|CAA96608.1|  338|Caenorhabditis elegans Hypothetical
           protein C50C10.2 protein.
          Length = 338

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 590 FVQPNRVLSVLIFQSFRIKNSFLAAFTIDHNVFII*THFDVFIILF 727
           ++ P  V+ + I   +R   + L + T+DHN+F     + +F ILF
Sbjct: 33  YILPTTVIMIAILVKYRKAKATLNSATMDHNIFAFIMFYFLFNILF 78


>U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical
           protein C49H3.3 protein.
          Length = 109

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 727 EKDNEDVEMSSDDENVVVDS-EGGKKRVFNTKTLKDQNGQYPVWL 596
           E + +D E +  D     +  E   +   NTKTLK ++G +P WL
Sbjct: 38  EYEKQDAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGSFPAWL 82


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 325 KTSTPMQYCIKQTILNYSFLCIKCSNIIIC*VQFVTLKVSNFEVLILLQFIY*FKI 158
           KTS  + +C    + +  FLC K  N +        + V N  +++  + I+ FKI
Sbjct: 377 KTSNNLNFCYLNFLCSLEFLCFKSFNSMTSASSLAVIGVLNL-IIVFREKIFSFKI 431


>Z72505-2|CAA96609.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.3 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 575 FGDLTFVQPNRVLSVLIFQSFRIKNSFLAAFTIDHNVFII*THFDVFIILF 727
           F    ++ P  V+ ++I   +R     +   ++D N+F+    +  F ILF
Sbjct: 32  FVPFIYIIPTSVIMIVILMKYRTAKMMMNTASMDPNIFVTIMFYFFFNILF 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,107
Number of Sequences: 27780
Number of extensions: 309157
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)