Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k14f
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 29 0.44
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 29 0.58
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.76
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 29 0.76
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 28 1.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 2.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 3.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 4.1
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 4.1
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 4.1
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 5.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 5.4
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 26 5.4
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 26 5.4
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 7.1
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 25 7.1
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 7.1
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.1
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 9.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 9.4
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 9.4
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 137 KELARLKKMLGVKDEEKPAGSEV 205
+E+A L+KMLG+K ++K A S++
Sbjct: 115 REIAHLEKMLGIKSKDKSAHSKI 137
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 29.1 bits (62), Expect = 0.58
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +2
Query: 131 AVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSS 310
A KE+ RL ++ SE+ ++E+V + K + L D E ++E+V +
Sbjct: 77 ATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEE--LTDEESEDEEVYDPA 134
Query: 311 DDENVVVDSEGGKKRVFNTKT 373
E ++ SE + ++T
Sbjct: 135 RGEGIISTSESSDESDAESET 155
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 0.76
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 257 KKVLEDI-EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQY 397
K VLED+ +KDNE SD+E+ V D E F+ K N +Y
Sbjct: 160 KGVLEDVLKKDNELKFNDSDEEDEVDDEEIESFNSFSRKMQTISNSRY 207
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 28.7 bits (61), Expect = 0.76
Identities = 24/75 (32%), Positives = 38/75 (50%)
Frame = +2
Query: 86 SRWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKV 265
SR +R+ R + R A + L R +KM + D G V + + + D+ SK V
Sbjct: 481 SRAERRQRFRQSLRAAERILVRSQKMNSLDDMSY--GLLVFQVNLMAIMSM-DMGLSKDV 537
Query: 266 LEDIEKDNEDVEMSS 310
ED+ +D ED++ SS
Sbjct: 538 AEDLLQDLEDIQSSS 552
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 263 VLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 388
+LED E N D E DD++++ + +N+K+LK++N
Sbjct: 6 MLEDDE--NYDFEFEDDDDDMIEPYVDVENCYYNSKSLKEEN 45
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 243 SPASRNITCSDSITSLPAGFSSSLTPSIFFNRANS--FTAYRSRLIALH 103
+PAS T + S++S + SSS TPS + A S + S LIAL+
Sbjct: 749 TPASSTSTTTSSVSSRQSSSSSSFTPSSAISTAKSSFVLSTLSILIALY 797
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +2
Query: 68 MAKSIRSRWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMES-EQVIFLDAGD 244
+ S+R + ++ ++ + RY+++ +A +K VK E + +E + + D
Sbjct: 823 LQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESEVKYNELNEQVKTLEGYVETVLEKFND 882
Query: 245 LKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRV 358
LK KV E + + NV V S+ K V
Sbjct: 883 LKIENKVPETAPDVVPSSYPPAAESNVSVSSDTSTKDV 920
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 240 PASRNITCSDSITSLPAGFSSSLTPSIF 157
P S + S SIT++ +G SSS PS F
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTF 573
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 3.1
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Frame = +2
Query: 71 AKSIRSRWKRKCRAIKR-ERYAVKE-LARLKKMLG--VKDEEKPAGSEVMESEQVIFLDA 238
+KS+R+ K RAI +R+ V E +++L + +K K E E VI +D
Sbjct: 1582 SKSVRT----KLRAISTIQRFPVSEWVSKLDTHVRNCIKFSHKQNLEEDFIHEPVIDVDE 1637
Query: 239 GDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEG 343
+ SK DI+ D ED+E+ +N +DS G
Sbjct: 1638 FAISSSK----DIDAD-EDLEIIGSSDNKAIDSNG 1667
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 209 ESEQVIFLDAGDLKKS-KKVLEDIEKDN 289
E +++ DA ++K+ K+V+ED+EK+N
Sbjct: 1600 EEHSIVYEDAKLMEKTLKEVIEDLEKNN 1627
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 209 ESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSS 310
+ E + +L D+ K KK E +EK N+D + S
Sbjct: 54 QKEFLPYLTTEDVGKHKKTKESLEKSNDDSQKIS 87
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 92 WKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVME 211
WK K IK E V+++ LKK ++ E P S + +
Sbjct: 211 WKNKVEQIKNESRLVRKIQELKK--SYQESEHPIVSSIRD 248
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 152 LKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVV 331
LK +G+K+ E S +SE ++F + D K L D+E + + S +V
Sbjct: 215 LKSYIGLKNMEYRVRSSFNQSETIVFSGSED---GKVYLWDLENETQITSTSVVGTPIVT 271
Query: 332 D 334
D
Sbjct: 272 D 272
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 284 DNEDVEMSSDDENVVVDSEGGKK 352
+ EDVEM S+D++ +SE G K
Sbjct: 1322 NEEDVEMRSEDQSDTSESEVGSK 1344
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 239 GDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQ 394
GDLKK +V + E D+ S E + S K R++ + G+
Sbjct: 17 GDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGK 68
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 272 DIEKDNEDVEMSSDDENVVVDSE 340
D+E+D +DVE SS++E V DS+
Sbjct: 351 DVEEDEDDVESSSNEE--VSDSD 371
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 246 KSPASRNITCSDS-ITSLPAGFSSSLTPSIFFNRANSFTAYRS 121
++P + I+ +S ++S P +SSLTP N A ++A+RS
Sbjct: 175 QTPRAAAISKRESGVSSEPRARTSSLTPGNTPNSAKQWSAFRS 217
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 89 RWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLK-KSKKV 265
RW + Y + + +K + DE ++ES ++ +L+ + K +
Sbjct: 14 RWSALVLGLGAGMYEHRSHIQCQKQKEI-DENYHRQESLIESAKIAYLNTKNTPPKEDSM 72
Query: 266 LEDIEKDNEDVEM 304
L +++KD+ED +M
Sbjct: 73 LPNLKKDSEDFDM 85
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 240 PASRNITCSDSITSLPAGFSSSLTP 166
P R+ + S+ +TS+ SSSL+P
Sbjct: 359 PTKRSFSMSEIVTSMQMSISSSLSP 383
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 3 LSRDYLQKRVAL--LQNIFVFKTQWRNRLGADGSENAGRSNENGM 131
LS ++ +K+ L LQN + +T R +G+DGS + E M
Sbjct: 244 LSENFQRKQEILSGLQNNVILRTNNRKPVGSDGSNSNFNGGEEQM 288
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/64 (26%), Positives = 37/64 (57%)
Frame = +2
Query: 107 RAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKD 286
RA ++E+ E+A + +LG++ E +E+ME + V+ +L+ S + ++ EKD
Sbjct: 102 RARRKEKNRRDEVA--EAILGLQHEIVRI-NEIMEKQFVLQKKKNELQSSTEEIDSTEKD 158
Query: 287 NEDV 298
+++
Sbjct: 159 FDEL 162
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 173 KDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMS--SDDENVVVDSEG 343
K+EE+P SE +++ + D D ++ L + ++ ++++ S+D + + +EG
Sbjct: 503 KEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKVTEPSNDADKAIVAEG 561
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 9.4
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = +2
Query: 209 ESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 388
E + IF A D K +E + K+ E D V + K+R+ K LKD
Sbjct: 258 ERARTIFKYAIDFMPRSKSME-LYKEYTHFEKQFGDHLGVESTVLDKRRLQYEKLLKDSP 316
Query: 389 GQYPVWL 409
Y WL
Sbjct: 317 YDYDTWL 323
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2
Query: 248 KKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 388
K +KVL+ ++ + E+ +++S + V+VDS+ ++ N +KD N
Sbjct: 63 KVVEKVLDTLKAEVEE-KLASSQDLVLVDSDMEEQSDSNLMEVKDTN 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,217
Number of Sequences: 5004
Number of extensions: 40688
Number of successful extensions: 200
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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