Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k14f
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.83 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = -3

Query: 359 KLFSC-RLHYRPQRFHHLNSFRRLH---YPFRC 273
           K F C   H R  R HHL +  RLH    P+ C
Sbjct: 8   KPFECPECHKRFTRDHHLKTHMRLHTGEKPYHC 40


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +2

Query: 167 GVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGG 346
           G+ D+  P   E  E+++ + LD+ D+ +    L+D     +DV+   +DE V+   +  
Sbjct: 311 GMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVK--CEDERVISIPDKE 368

Query: 347 KKRVFNTKTLKDQNG 391
                N +T+   NG
Sbjct: 369 ITVPSNEETIDINNG 383


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 586 NDILCQSFKKNVVKYFR 536
           NDI C+ ++KN   Y R
Sbjct: 159 NDIYCEKYEKNGETYLR 175


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 244 IARVQKYNLLRFHNLTSSWFLFIFDAEHFFQ 152
           +A V   N + F  L S   +  +++EHFF+
Sbjct: 310 VAEVMDRNGVLFFGLLSDLAIGCWNSEHFFE 340


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 245 LKKSKKVLEDIEKDNEDVEMSSDDENVV 328
           L K++    D EK  ED+EM +  EN++
Sbjct: 495 LSKAELDKMDKEKKLEDLEMGTPLENIL 522


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 195 PAGFSSSLTPSIFFNRANSFTAYRSRLIALHFRFHLLL 82
           P G  +S+ P   + +A  +T   +    L F  H++L
Sbjct: 29  PPGEINSINPINVYTKAYIYTIKSNMAKTLQFDVHMML 66


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 284 DNEDVEMSSDDENVVVDSEGGKKRVF-NTKTLK 379
           DN++V M + +     DS+  K ++F N + +K
Sbjct: 178 DNQEVSMENTENKSCTDSDIEKYKMFCNLENVK 210


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 404 KPGTVRSDLSKFSY*KLFSCRLHYRPQRFHHLNSFRRL 291
           +P   R+DLSK  Y  L       + + +  L S+R L
Sbjct: 237 EPSANRTDLSKDDYESLVHLYTRDQSETYDVLRSWRNL 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,977
Number of Sequences: 438
Number of extensions: 3132
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)