Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k13r
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-3259|AAG22448.2|  300|Drosophila melanogaster CG18810-P...    31   1.4  
M34394-1|AAA28976.1| 1275|Drosophila melanogaster protein ( D.me...    29   4.2  
M21306-1|AAA56928.1| 1274|Drosophila melanogaster photoreceptor ...    29   4.2  
BT009947-1|AAQ22416.1|  736|Drosophila melanogaster RH67917p pro...    29   4.2  
AE014297-4482|AAF56970.1| 1275|Drosophila melanogaster CG7875-PA...    29   4.2  
AE013599-2919|AAF57539.1|  408|Drosophila melanogaster CG15121-P...    28   9.8  

>AE014134-3259|AAG22448.2|  300|Drosophila melanogaster CG18810-PA
           protein.
          Length = 300

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +2

Query: 416 YKYFNYVLHHTVLFCFVKNTNNSILLE--HSG-YKIXCIYITD*TTKEFNLKKRRIISYN 586
           Y+YF Y L +  L C +  T++SI +   H G Y++  +      +  FN    RII + 
Sbjct: 139 YRYFFYFLIYFFLSCMISLTSSSIFIYVLHGGRYQLFMLTHPAPNSAYFNSLIIRIIYFK 198

Query: 587 LTSIHKVI 610
           L  I++++
Sbjct: 199 LPDIYELV 206


>M34394-1|AAA28976.1| 1275|Drosophila melanogaster protein (
           D.melanogaster trp proteingene, complete cds. ).
          Length = 1275

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -2

Query: 233 KCHNDFEKNEKFSFHFIXPINSAELVTIISTYFKSFMIFMLLYAXQIGTLRLVRNLESYV 54
           K   +++  +KF+ +   P+N + L++ I       M+ +L +  ++G   L    E YV
Sbjct: 50  KILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILLEHNIEVGDALLHAISEEYV 109

Query: 53  D 51
           +
Sbjct: 110 E 110


>M21306-1|AAA56928.1| 1274|Drosophila melanogaster photoreceptor
           membrane-associatedprotein protein.
          Length = 1274

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -2

Query: 233 KCHNDFEKNEKFSFHFIXPINSAELVTIISTYFKSFMIFMLLYAXQIGTLRLVRNLESYV 54
           K   +++  +KF+ +   P+N + L++ I       M+ +L +  ++G   L    E YV
Sbjct: 50  KILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILLEHNIEVGDALLHAISEEYV 109

Query: 53  D 51
           +
Sbjct: 110 E 110


>BT009947-1|AAQ22416.1|  736|Drosophila melanogaster RH67917p
           protein.
          Length = 736

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -2

Query: 233 KCHNDFEKNEKFSFHFIXPINSAELVTIISTYFKSFMIFMLLYAXQIGTLRLVRNLESYV 54
           K   +++  +KF+ +   P+N + L++ I       M+ +L +  ++G   L    E YV
Sbjct: 50  KILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILLEHNIEVGDALLHAISEEYV 109

Query: 53  D 51
           +
Sbjct: 110 E 110


>AE014297-4482|AAF56970.1| 1275|Drosophila melanogaster CG7875-PA
           protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -2

Query: 233 KCHNDFEKNEKFSFHFIXPINSAELVTIISTYFKSFMIFMLLYAXQIGTLRLVRNLESYV 54
           K   +++  +KF+ +   P+N + L++ I       M+ +L +  ++G   L    E YV
Sbjct: 50  KILEEYQGTDKFNINCTDPMNRSALISAIENENFDLMVILLEHNIEVGDALLHAISEEYV 109

Query: 53  D 51
           +
Sbjct: 110 E 110


>AE013599-2919|AAF57539.1|  408|Drosophila melanogaster CG15121-PA
           protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 407 NYKYKYFNYVLHHTVLFCFVKNTNNSILLEHSGYKIXCIY 526
           N    Y   VLH   L  F  N N S+ L+H+  ++   Y
Sbjct: 159 NATRSYTRNVLHAMALLMFSANMNMSVKLKHASIRVIIFY 198


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,076,553
Number of Sequences: 53049
Number of extensions: 316418
Number of successful extensions: 357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)