Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k13f
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D8B557 Cluster: UPI0000D8B557 related cluster; n...    34   2.3  
UniRef50_A7S073 Cluster: Predicted protein; n=1; Nematostella ve...    33   5.3  
UniRef50_A3LZJ1 Cluster: Predicted protein; n=1; Pichia stipitis...    33   7.0  
UniRef50_A2DMD9 Cluster: Putative uncharacterized protein; n=1; ...    32   9.3  

>UniRef50_UPI0000D8B557 Cluster: UPI0000D8B557 related cluster; n=1;
           Mus musculus|Rep: UPI0000D8B557 UniRef100 entry - Mus
           musculus
          Length = 404

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +3

Query: 129 VCYRLCCNVIG*VDNALCYRYFCSHLYVCLCVPYLYAVDC 248
           +CYR  C V      ALCYRY C   Y     P  Y   C
Sbjct: 62  LCYRYSCAVCYRYSCALCYRYSCPLCYRWYSCPLCYRYSC 101



 Score = 34.3 bits (75), Expect = 2.3
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 129 VCYRLCCNVIG*VDNALCYRYFCS--HLYVC-LCVPYLYAV 242
           +CYR  C V      ALCYRY C+  + Y C LC  Y  AV
Sbjct: 167 LCYRYSCAVCYSYSCALCYRYSCALCYRYSCALCYSYSCAV 207



 Score = 33.9 bits (74), Expect = 3.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 129 VCYRLCCNVIG*VDNALCYRYFCSHLYVCLCVPYLYAVDCS 251
           +CYR  C +       LCYRY C+  Y   C P  Y+  CS
Sbjct: 95  LCYRYSCPLCYRYSCPLCYRYSCALCYRYSC-PLCYSYSCS 134



 Score = 33.9 bits (74), Expect = 3.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 129 VCYRLCCNVIG*VDNALCYRYFCSHLYVCLCVPYLYAVDCS 251
           +CY   C+V      ALC+RY C+  Y   C P  Y+  C+
Sbjct: 127 LCYSYSCSVCYRYSCALCFRYICALCYRYSC-PLCYSYSCA 166



 Score = 33.5 bits (73), Expect = 4.0
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 129 VCYRLCCNVIG*VDNALCYRYFCS--HLYVC-LCVPYLYAVDCSDASTTLYIYS 281
           +CYR  C +      ALCYRY C+  + Y C LC  Y  A+    +    Y YS
Sbjct: 151 LCYRYSCPLCYSYSCALCYRYSCAVCYSYSCALCYRYSCALCYRYSCALCYSYS 204



 Score = 32.3 bits (70), Expect = 9.3
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 129 VCYRLCCNVIG*VDNALCYRYFCSHLYVCLCVPYLYAVDCSDASTTLYIYS 281
           +CYR  C +      A+CYRY C+     LC  Y  AV  S +    Y YS
Sbjct: 14  LCYRYSCPLCYSYSCAVCYRYSCA-----LCYSYSCAVCYSYSCAVCYRYS 59


>UniRef50_A7S073 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 135

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 160 VKLTMRFVIDISVHICMSVCVSRTCTP*TVVTLQLHYIYIVKVLLRLMYCK----*FNYC 327
           V +T+ +   ++V I  S CV+ T      VT+ +HY Y V + +   YC      ++YC
Sbjct: 41  VTVTIHYSYCVTVAIHHSYCVTVTIHYSYCVTVTIHYSYFVTIAIHHSYCVTVTIHYSYC 100

Query: 328 YVKIFHF 348
                H+
Sbjct: 101 VTVTIHY 107


>UniRef50_A3LZJ1 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 505

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -2

Query: 194 EISITKRIVNLTNHITTQSVTNECPIST-GPSSS*NMLFYVCIEK*NRRQNIIVTNS 27
           +I ++ R++ + N   +Q +TN+C I T G S     LF  C+ + N+R N+I+ +S
Sbjct: 233 KIDLSDRVI-IEN--ASQHITNDCTIMTYGHSEVLEKLFKYCVIEQNKRFNLIIVDS 286


>UniRef50_A2DMD9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 170

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 23/88 (26%), Positives = 43/88 (48%)
 Frame = +1

Query: 169 TMRFVIDISVHICMSVCVSRTCTP*TVVTLQLHYIYIVKVLLRLMYCK*FNYCYVKIFHF 348
           T+ F++  +  +     + R+  P  V T +   ++ V  + RL +C+      VKIF F
Sbjct: 40  TLAFLLTFAFELVRFWVIERSRHP-IVQTFKTSLLWSVPGICRL-FCE-----NVKIFEF 92

Query: 349 VL*FSFNIICFIVELVRFEDWFSSADRT 432
           ++ F  +I  F+V +  F DW  +  +T
Sbjct: 93  LICFYISIAGFVVGIKYFADWIYTCHKT 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 497,869,800
Number of Sequences: 1657284
Number of extensions: 8990043
Number of successful extensions: 16199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16156
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)