Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k13f
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.87 
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   8.1  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   8.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 177 LCYRYFCSHLYVCLCVPYLY 236
           LC  YF   L+  LC+ Y Y
Sbjct: 131 LCIYYFVVPLFFLLCIYYFY 150



 Score = 24.2 bits (50), Expect = 0.87
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 177 LCYRYFCSHLYVCLCVPYLYA 239
           LC  YF  HL    C+ Y Y+
Sbjct: 197 LCLDYFTLHLLFLPCIYYFYS 217



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 144 CCNVIG*VDNALCYRYFCSHLYVCLCVPYLY 236
           C  +I  V   LC  YF     + LCV Y Y
Sbjct: 87  CPFIIFTVHFLLCTYYFYYAFIILLCVYYFY 117



 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 177 LCYRYFCSHLYVCLCVPY 230
           LC  YF   L + LC+ Y
Sbjct: 283 LCIYYFYCALIILLCIYY 300


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +1

Query: 478 MYFLFCYDVIVLNLLLTFYI 537
           +Y ++C   +VL  + TF++
Sbjct: 124 VYLVYCSSALVLAAMTTFHL 143


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +1

Query: 478 MYFLFCYDVIVLNLLLTFYI 537
           +Y ++C   +VL  + TF++
Sbjct: 120 VYLVYCSSALVLAAMTTFHL 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,216
Number of Sequences: 336
Number of extensions: 2835
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)