Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k13f
         (609 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    30   5.5  
AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    29   9.7  

>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 129 VCYRLCCNVIG*VDNALCYRYFCSHLYVCLCV 224
           VC  LC +V   V + LC  Y C  +YVC CV
Sbjct: 157 VCVCLCVSVYVCVSSYLCV-YLCVCMYVCECV 187


>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 123 TFVCYRLCCNVIG*VDNALCYRYFCSHLYVC-LCVPYLYAVDCSDASTTLYIY 278
           T +C R+  +V G  D  +   Y C H+Y+C L   Y+    C+     +YI+
Sbjct: 11  TCICIRVYVHVYGCTD--VYSMYICMHVYMCTLYTVYMCVYMCTCIPVRVYIH 61


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,210,059
Number of Sequences: 237096
Number of extensions: 1373644
Number of successful extensions: 1988
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1984
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)