Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k12r
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    28   1.6  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    26   5.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.0  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.0  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   8.8  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 525 KVSYVHYFHPIFLLCLYLFSYQVSHLSLFSLFQN 626
           KV++  Y H    +  ++F+Y    L L SLF N
Sbjct: 419 KVTFFQYLHDYSYIATFVFTYVFQALMLGSLFYN 452


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 620 KKRKERKMRNLVRKKIKTQKKNRMKVMNIR 531
           +KRK +KM  L+ K+ +  K+ + K+ N+R
Sbjct: 18  QKRKSKKMEELLSKQREECKELQSKITNLR 47


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 355 RWRRFYLLLQSMFPKF*IVSFYSFRFWIVRLSHFY*YRRLFLF*ITKLWNFS 510
           +W RF+ L +  + K    +FY  R W   +++F    R+++   T  W ++
Sbjct: 453 KWERFHKLSEVDWKKAFYKTFYESRSWFHLVTNF---NRIWVIHFTTYWYYT 501


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 528 PSISKLGKIPKLSDLKKEKPSISIEVRKPD 439
           P+IS   +  + + LKKEKP IS E + P+
Sbjct: 426 PTISDEAEPTERAFLKKEKPQISKEKKNPN 455


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 171 LNFELLNFIMMLIIFSGVHRGLHHFCK 91
           +NF   NF+ +L   + V++G  H C+
Sbjct: 4   MNFRNFNFMPLLRPLNPVYKGAEHLCR 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,843
Number of Sequences: 5004
Number of extensions: 44908
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)