Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k12r
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0328 - 33172369-33173691                                         29   3.0  
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    29   3.0  
03_05_0799 + 27809301-27811550                                         28   6.9  
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997...    28   9.2  
02_02_0041 + 6275636-6275749,6276659-6276695,6276927-6277036,627...    28   9.2  

>03_06_0328 - 33172369-33173691
          Length = 440

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = -1

Query: 270 NETPPEKKLKTMEIVEKPGSIKLIPPKPKRKYNLNFELLNFIMMLIIFSG-----VHRGL 106
           +E P +   +  EI++   S+  +   PKR  NL+  + +    LI+F+       HR L
Sbjct: 72  SEPPVQVAARPEEILDDGSSVLQLLDLPKRALNLHTSVQSVADDLIVFTSCLRNRTHRYL 131

Query: 105 HHFCKSQSVTFFFCFPFICGKSKMYK 28
            +    +S++   C P  C  S  ++
Sbjct: 132 VYDAIGKSLSMIPCLPNRCDPSATFQ 157


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 626 ILKKRKERKMRNLVRKKIKTQKKNRMK 546
           ++KK+K++K +   +KK K +KKN+ K
Sbjct: 66  VMKKKKKKKKKKKKKKKKKKKKKNKKK 92


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 267 ETPPEKKLKTMEIVEKPGSIKLIPP 193
           E+PPEK++ T E +   G   L+PP
Sbjct: 684 ESPPEKQVTTAESINSVGPSPLMPP 708


>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
            21500187-21500418,21500488-21500668,21501342-21501438,
            21501641-21501779,21502024-21502351,21502890-21503137,
            21503270-21503543,21504200-21504291,21504451-21504521,
            21505091-21505181,21506526-21507380,21507482-21507594,
            21508007-21508074,21508655-21508835,21509084-21509186,
            21509273-21509379,21510046-21511584,21511661-21511771,
            21511856-21511908,21511988-21512063,21512147-21512366,
            21512477-21512901,21513193-21513372,21513503-21515474
          Length = 2680

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
 Frame = -1

Query: 456  EVRKPDDPKPKTVKAYNSKFRKHGLEEEIKP---PPSRSVLLNKKAXXXXXXXXXXXPKR 286
            +   P DPK  T    NS   K G    +KP           +K              K 
Sbjct: 782  QTEPPKDPKDHTASTNNSHVSKEGSSRNVKPTLTSEETHTAEDKSFSFEVGAPLNITEKA 841

Query: 285  HSPVHNETPPEKKLKTMEI---VEKPGS 211
            H+P  +  P  +  ++ E+   + KPG+
Sbjct: 842  HAPAWSPLPRPEVAQSPEVTTGIPKPGN 869


>02_02_0041 +
           6275636-6275749,6276659-6276695,6276927-6277036,
           6277113-6277212,6277298-6277384,6277771-6278018,
           6278178-6278231
          Length = 249

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 277 WRMSFRYRDYGRYGWWWCF 333
           W+  FR  D  R+G +WCF
Sbjct: 2   WQRKFRRLDVPRFGIFWCF 20


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,232,652
Number of Sequences: 37544
Number of extensions: 268735
Number of successful extensions: 867
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)