Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k12r
(753 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64228-1|CAA45535.1| 2090|Homo sapiens putative oncogene protein. 31 4.5
D14689-1|BAA03515.1| 2093|Homo sapiens KIAA0023 protein. 31 4.5
BC105998-1|AAI05999.1| 2080|Homo sapiens NUP214 protein protein. 31 4.5
BC045620-1|AAH45620.2| 2090|Homo sapiens nucleoporin 214kDa prot... 31 4.5
AL157938-9|CAI41111.1| 2090|Homo sapiens nucleoporin 214kDa prot... 31 4.5
AL157938-8|CAI41109.1| 1684|Homo sapiens nucleoporin 214kDa prot... 31 4.5
AB159230-1|BAD07398.1| 2091|Homo sapiens KIAA0023 splice variant... 31 4.5
AB052622-1|BAB86306.1| 1250|Homo sapiens hDDM36 protein. 31 5.9
AB046848-1|BAB13454.1| 980|Homo sapiens KIAA1628 protein protein. 31 5.9
BC065004-1|AAH65004.1| 306|Homo sapiens coiled-coil domain cont... 30 7.8
AJ557013-1|CAD89526.1| 482|Homo sapiens C3orf6 protein protein. 30 7.8
AJ416916-1|CAC95196.1| 306|Homo sapiens C3orf6 protein protein. 30 7.8
>X64228-1|CAA45535.1| 2090|Homo sapiens putative oncogene protein.
Length = 2090
Score = 31.1 bits (67), Expect = 4.5
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 212 EPGFSTISIVLSFFSGGVSLCTGECLFGIETXXXXXXXXAFLFNSTERDGGGFISSSNPC 391
+PGFS++ S + +G +FG + +F +S GG F S+ P
Sbjct: 1747 QPGFSSVPAFGQPASSTPTSTSGS-VFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPA 1805
Query: 392 F---LNFEL*AFTVFGFGSSGFLTSIDIEGFSFFKSLSFG 502
F F +VFG G+S T+ GFSF ++ FG
Sbjct: 1806 FGQSPGFGQ-GGSVFG-GTSAATTTAATSGFSFCQASGFG 1843
>D14689-1|BAA03515.1| 2093|Homo sapiens KIAA0023 protein.
Length = 2093
Score = 31.1 bits (67), Expect = 4.5
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 212 EPGFSTISIVLSFFSGGVSLCTGECLFGIETXXXXXXXXAFLFNSTERDGGGFISSSNPC 391
+PGFS++ S + +G +FG + +F +S GG F S+ P
Sbjct: 1726 QPGFSSVPAFGQPASSTPTSTSGS-VFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPA 1784
Query: 392 F---LNFEL*AFTVFGFGSSGFLTSIDIEGFSFFKSLSFG 502
F F +VFG G+S T+ GFSF ++ FG
Sbjct: 1785 FGQSPGFGQ-GGSVFG-GTSAATTTAATSGFSFCQASGFG 1822
>BC105998-1|AAI05999.1| 2080|Homo sapiens NUP214 protein protein.
Length = 2080
Score = 31.1 bits (67), Expect = 4.5
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 212 EPGFSTISIVLSFFSGGVSLCTGECLFGIETXXXXXXXXAFLFNSTERDGGGFISSSNPC 391
+PGFS++ S + +G +FG + +F +S GG F S+ P
Sbjct: 1737 QPGFSSVPAFGQPASSTPTSTSGS-VFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPA 1795
Query: 392 F---LNFEL*AFTVFGFGSSGFLTSIDIEGFSFFKSLSFG 502
F F +VFG G+S T+ GFSF ++ FG
Sbjct: 1796 FGQSPGFGQ-GGSVFG-GTSAATTTAATSGFSFCQASGFG 1833
>BC045620-1|AAH45620.2| 2090|Homo sapiens nucleoporin 214kDa protein.
Length = 2090
Score = 31.1 bits (67), Expect = 4.5
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 212 EPGFSTISIVLSFFSGGVSLCTGECLFGIETXXXXXXXXAFLFNSTERDGGGFISSSNPC 391
+PGFS++ S + +G +FG + +F +S GG F S+ P
Sbjct: 1747 QPGFSSVPAFGQPASSTPTSTSGS-VFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPA 1805
Query: 392 F---LNFEL*AFTVFGFGSSGFLTSIDIEGFSFFKSLSFG 502
F F +VFG G+S T+ GFSF ++ FG
Sbjct: 1806 FGQSPGFGQ-GGSVFG-GTSAATTTAATSGFSFCQASGFG 1843
>AL157938-9|CAI41111.1| 2090|Homo sapiens nucleoporin 214kDa protein.
Length = 2090
Score = 31.1 bits (67), Expect = 4.5
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 212 EPGFSTISIVLSFFSGGVSLCTGECLFGIETXXXXXXXXAFLFNSTERDGGGFISSSNPC 391
+PGFS++ S + +G +FG + +F +S GG F S+ P
Sbjct: 1747 QPGFSSVPAFGQPASSTPTSTSGS-VFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPA 1805
Query: 392 F---LNFEL*AFTVFGFGSSGFLTSIDIEGFSFFKSLSFG 502
F F +VFG G+S T+ GFSF ++ FG
Sbjct: 1806 FGQSPGFGQ-GGSVFG-GTSAATTTAATSGFSFCQASGFG 1843
>AL157938-8|CAI41109.1| 1684|Homo sapiens nucleoporin 214kDa protein.
Length = 1684
Score = 31.1 bits (67), Expect = 4.5
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 212 EPGFSTISIVLSFFSGGVSLCTGECLFGIETXXXXXXXXAFLFNSTERDGGGFISSSNPC 391
+PGFS++ S + +G +FG + +F +S GG F S+ P
Sbjct: 1341 QPGFSSVPAFGQPASSTPTSTSGS-VFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPA 1399
Query: 392 F---LNFEL*AFTVFGFGSSGFLTSIDIEGFSFFKSLSFG 502
F F +VFG G+S T+ GFSF ++ FG
Sbjct: 1400 FGQSPGFGQ-GGSVFG-GTSAATTTAATSGFSFCQASGFG 1437
>AB159230-1|BAD07398.1| 2091|Homo sapiens KIAA0023 splice variant 1
protein.
Length = 2091
Score = 31.1 bits (67), Expect = 4.5
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 212 EPGFSTISIVLSFFSGGVSLCTGECLFGIETXXXXXXXXAFLFNSTERDGGGFISSSNPC 391
+PGFS++ S + +G +FG + +F +S GG F S+ P
Sbjct: 1748 QPGFSSVPAFGQPASSTPTSTSGS-VFGAASSTSSSSSFSFGQSSPNTGGGLFGQSNAPA 1806
Query: 392 F---LNFEL*AFTVFGFGSSGFLTSIDIEGFSFFKSLSFG 502
F F +VFG G+S T+ GFSF ++ FG
Sbjct: 1807 FGQSPGFGQ-GGSVFG-GTSAATTTAATSGFSFCQASGFG 1844
>AB052622-1|BAB86306.1| 1250|Homo sapiens hDDM36 protein.
Length = 1250
Score = 30.7 bits (66), Expect = 5.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 537 HKTPSISKLGKIPKL-SDLKKEKPSISIEVRKPDDPKPKTVKAYNSKFRKHGLEEE 373
H+TPS+ +P ++LK + S+ V P P + Y +R+ G EEE
Sbjct: 618 HRTPSMHNQSHVPFAPAELKVQAKMESLVVSWQPPPHPTQISGYKLYWREVGAEEE 673
>AB046848-1|BAB13454.1| 980|Homo sapiens KIAA1628 protein protein.
Length = 980
Score = 30.7 bits (66), Expect = 5.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 537 HKTPSISKLGKIPKL-SDLKKEKPSISIEVRKPDDPKPKTVKAYNSKFRKHGLEEE 373
H+TPS+ +P ++LK + S+ V P P + Y +R+ G EEE
Sbjct: 348 HRTPSMHNQSHVPFAPAELKVQAKMESLVVSWQPPPHPTQISGYKLYWREVGAEEE 403
>BC065004-1|AAH65004.1| 306|Homo sapiens coiled-coil domain
containing 50 protein.
Length = 306
Score = 30.3 bits (65), Expect = 7.8
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = -1
Query: 480 KEKPSISIEVRKPDDP-KPKTVKAYNSKFRK-----HGLEEE-IKPPP 358
KE+ S++ RK D KPKT KA NSK ++ H E +PPP
Sbjct: 221 KEREKSSLDKRKQDPEWKPKTAKAANSKSKESDEPHHSKNERPARPPP 268
>AJ557013-1|CAD89526.1| 482|Homo sapiens C3orf6 protein protein.
Length = 482
Score = 30.3 bits (65), Expect = 7.8
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = -1
Query: 480 KEKPSISIEVRKPDDP-KPKTVKAYNSKFRK-----HGLEEE-IKPPP 358
KE+ S++ RK D KPKT KA NSK ++ H E +PPP
Sbjct: 397 KEREKSSLDKRKQDPEWKPKTAKAANSKSKESDEPHHSKNERPARPPP 444
>AJ416916-1|CAC95196.1| 306|Homo sapiens C3orf6 protein protein.
Length = 306
Score = 30.3 bits (65), Expect = 7.8
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = -1
Query: 480 KEKPSISIEVRKPDDP-KPKTVKAYNSKFRK-----HGLEEE-IKPPP 358
KE+ S++ RK D KPKT KA NSK ++ H E +PPP
Sbjct: 221 KEREKSSLDKRKQDPEWKPKTAKAANSKSKESDEPHHSKNERPARPPP 268
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,731,689
Number of Sequences: 237096
Number of extensions: 1587673
Number of successful extensions: 8242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8078
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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