Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k12r
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical ... 35 0.054
Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical pr... 31 0.66
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 31 0.88
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 31 0.88
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 31 0.88
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 31 0.88
U50300-7|AAC48106.1| 645|Caenorhabditis elegans Hypothetical pr... 29 2.7
U58753-4|AAC24435.2| 312|Caenorhabditis elegans Hypothetical pr... 29 3.5
U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 29 3.5
AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical... 29 4.7
Z32683-6|CAA83623.1| 728|Caenorhabditis elegans Hypothetical pr... 28 6.2
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 8.2
AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical ... 28 8.2
>AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical
protein F20H11.4 protein.
Length = 446
Score = 35.1 bits (77), Expect = 0.054
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -1
Query: 498 KLSDLKKEKPSISIEVRKPDDPKP--KTVKAYNSKFRKH-GLEEEIKPPPSRSVLLNKK 331
K DLK+EK + + +K +D K K K + K +K + ++KPPP L NKK
Sbjct: 47 KFKDLKEEKSKVPDDGKKQEDKKEVKKEEKKKDEKNKKSKNRKSKMKPPPDTQELANKK 105
>Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical
protein T13F3.8 protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.66
Identities = 25/105 (23%), Positives = 43/105 (40%)
Frame = -1
Query: 498 KLSDLKKEKPSISIEVRKPDDPKPKTVKAYNSKFRKHGLEEEIKPPPSRSVLLNKKAXXX 319
K + ++KP + E K D+PK + K K ++ EEE K V +K
Sbjct: 69 KKEEKVEKKPEENKEAEKKDEPKKEEEKKEEEKKKEEKKEEEKK----EEVKEEEKKDDS 124
Query: 318 XXXXXXXXPKRHSPVHNETPPEKKLKTMEIVEKPGSIKLIPPKPK 184
++ N+ EKK + + EKP +++P + K
Sbjct: 125 KRDEKKKDGEKKEDDENKEDNEKKKEEKKEDEKPKKEEIVPQEQK 169
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 31.1 bits (67), Expect = 0.88
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = -1
Query: 534 KTPSISKLGKIPKLSDLKKEKPSISI--EVRKPDDPKPKTVKAYNSKFRKHGLEEEIKPP 361
K+PS K K P+ ++ K P+ EV+ P + P A +K K EE+K P
Sbjct: 1375 KSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSP----ASPTKKEKSPAAEEVKSP 1430
Query: 360 PSRSVLLNKKAXXXXXXXXXXXPKRHSPVHNETPPEKKLKTMEIVEKPGSIKLIPPKPK 184
+ + K V ++PP+ K + EKP +K K K
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTK-KTGDEVKEKSPPKSPTKKEKSPEKPEDVKSPVKKEK 1488
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 31.1 bits (67), Expect = 0.88
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = -1
Query: 534 KTPSISKLGKIPKLSDLKKEKPSISI--EVRKPDDPKPKTVKAYNSKFRKHGLEEEIKPP 361
K+PS K K P+ ++ K P+ EV+ P + P A +K K EE+K P
Sbjct: 1375 KSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSP----ASPTKKEKSPAAEEVKSP 1430
Query: 360 PSRSVLLNKKAXXXXXXXXXXXPKRHSPVHNETPPEKKLKTMEIVEKPGSIKLIPPKPK 184
+ + K V ++PP+ K + EKP +K K K
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTK-KTGDEVKEKSPPKSPTKKEKSPEKPEDVKSPVKKEK 1488
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 31.1 bits (67), Expect = 0.88
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = -1
Query: 534 KTPSISKLGKIPKLSDLKKEKPSISI--EVRKPDDPKPKTVKAYNSKFRKHGLEEEIKPP 361
K+PS K K P+ ++ K P+ EV+ P + P A +K K EE+K P
Sbjct: 1375 KSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSP----ASPTKKEKSPAAEEVKSP 1430
Query: 360 PSRSVLLNKKAXXXXXXXXXXXPKRHSPVHNETPPEKKLKTMEIVEKPGSIKLIPPKPK 184
+ + K V ++PP+ K + EKP +K K K
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTK-KTGDEVKEKSPPKSPTKKEKSPEKPEDVKSPVKKEK 1488
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 31.1 bits (67), Expect = 0.88
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = -1
Query: 534 KTPSISKLGKIPKLSDLKKEKPSISI--EVRKPDDPKPKTVKAYNSKFRKHGLEEEIKPP 361
K+PS K K P+ ++ K P+ EV+ P + P A +K K EE+K P
Sbjct: 1375 KSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSP----ASPTKKEKSPAAEEVKSP 1430
Query: 360 PSRSVLLNKKAXXXXXXXXXXXPKRHSPVHNETPPEKKLKTMEIVEKPGSIKLIPPKPK 184
+ + K V ++PP+ K + EKP +K K K
Sbjct: 1431 TKKEKSPSSPTKKEKSPSSPTK-KTGDEVKEKSPPKSPTKKEKSPEKPEDVKSPVKKEK 1488
>U50300-7|AAC48106.1| 645|Caenorhabditis elegans Hypothetical
protein R03H4.5 protein.
Length = 645
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = -2
Query: 632 LKILKKRKERKMRNLVRKKIKTQKKNRMKVMNIRHL 525
L + KK+ +R+MRN VRK+++ K + ++ ++ HL
Sbjct: 563 LHLNKKKADREMRN-VRKRLRMIKCEKCQIFDLSHL 597
>U58753-4|AAC24435.2| 312|Caenorhabditis elegans Hypothetical
protein W03B1.7 protein.
Length = 312
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -1
Query: 207 KLIPPKPKRKYNLNFELLNFIMMLIIFSGVHRGLHHFCKSQSVTF 73
K IP K + +Y LL F LI FSG + FC S F
Sbjct: 132 KWIPKKNQYEYYAIIGLLTFRCFLIQFSGCLSYIFSFCSPDSTAF 176
>U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical
protein T13A10.1 protein.
Length = 155
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 507 KIPKLSDLKKEKPSISIEVRKPDDPKPKTVKAYNSKFRK 391
K K + KKEK + EV++PD PK + K K K
Sbjct: 63 KPEKEEEPKKEKSKMKSEVKEPDAPKKENDKTSEDKKEK 101
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 99 FCKSQSVTFFFCFPFICGKSKMYKLTGWKCI 7
FC S+ CF F+ G SK+YK +K +
Sbjct: 27 FCGIPSLVMMICFLFLMGFSKVYKNAFYKLV 57
>AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical
protein F36H12.5 protein.
Length = 197
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 483 KKEKPSISIEVRKPDDPKPKTVKAYNSKFRKHGLEEEIKP 364
KKEK + EV++PD PK + K ++ + +KP
Sbjct: 71 KKEKSKMKSEVKEPDAPKKDDKTSDEKKEKQEDTFDAVKP 110
>Z32683-6|CAA83623.1| 728|Caenorhabditis elegans Hypothetical
protein R07E5.8 protein.
Length = 728
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 270 NETPPEKKLKTMEIVEKPGSIKLIPPKPKRKYNLNFELLNFIMMLIIFSGVHRG 109
+E P+ + K+ + EKP K P K E+LNF+ +I SG + G
Sbjct: 269 DEVAPKDEFKSPVLEEKPKFQKNFKPVENIKTMHGSEILNFLKSIINASGYNFG 322
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = -1
Query: 456 EVRKPDDPKPKTVKAYNSKFRKHGLEEEIKPPPSRSVLLNKKAXXXXXXXXXXXPKRHSP 277
E+++P+ P + V A K ++ P P++ V + K+ K P
Sbjct: 225 EIKEPE-PATRKVPALKKKEPSTSVKPVSDPSPTKKVPVKKEPEVPPTPIKNPTKKWKPP 283
Query: 276 VHNETPPEKKLKTMEIVEKPGSI-KLIPPKPKRK 178
+ETP E ++K + EK + K P P K
Sbjct: 284 WEDETPVE-EVKEPPVPEKKAPVLKKKDPAPAAK 316
>AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical
protein Y54E10BR.1 protein.
Length = 912
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 516 SILKVSYVHYFHPIFLLCLYLF-SYQVSHLSLFSLFQ 623
S+L +SY F IFL+ L LF ++ HLS L Q
Sbjct: 698 SLLSISYESLFMLIFLVLLTLFVRFEFGHLSDVELLQ 734
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,795,596
Number of Sequences: 27780
Number of extensions: 255201
Number of successful extensions: 1088
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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