Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k12r
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   4.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   4.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   4.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   4.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   4.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   4.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 ASL*NSTVQNSNYTY 182
           +SL N+T+ N+NY Y
Sbjct: 82  SSLSNNTIHNNNYKY 96


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 ASL*NSTVQNSNYTY 182
           +SL N+T+ N+NY Y
Sbjct: 82  SSLSNNTIHNNNYKY 96


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 ASL*NSTVQNSNYTY 182
           +SL N+T+ N+NY Y
Sbjct: 83  SSLSNNTIHNNNYKY 97


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 ASL*NSTVQNSNYTY 182
           +SL N+T+ N+NY Y
Sbjct: 83  SSLSNNTIHNNNYKY 97


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 ASL*NSTVQNSNYTY 182
           +SL N+T+ N+NY Y
Sbjct: 83  SSLSNNTIHNNNYKY 97


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 138 ASL*NSTVQNSNYTY 182
           +SL N+T+ N+NY Y
Sbjct: 83  SSLSNNTIHNNNYKY 97


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 138 ASL*NSTVQNSNYTYVLVWEVL 203
           +SL N+T+ N+NY   L + ++
Sbjct: 316 SSLSNNTIHNNNYNKKLYYNII 337


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 443 GFLTSIDIEGFSFFKSLSFG 502
           GF+T  DIE  + FK++ +G
Sbjct: 517 GFITQSDIELANTFKAIIYG 536


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 122 VFIGVCITFANHKVLHFFFVS 60
           ++ GVC+TF    +L F  V+
Sbjct: 306 IWTGVCLTFVFGALLEFALVN 326


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 122 VFIGVCITFANHKVLHFFFVS 60
           ++ GVC+TF    +L F  V+
Sbjct: 306 IWTGVCLTFVFGALLEFALVN 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,438
Number of Sequences: 438
Number of extensions: 2946
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)