Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k12f
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69791-4|CAA93658.2|  362|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z49074-1|CAA88893.3|  771|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z49073-8|CAA88892.3|  771|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched relat...    27   9.0  

>Z69791-4|CAA93658.2|  362|Caenorhabditis elegans Hypothetical
           protein F39D8.3 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 163 PHSDT*NNHSNYAIIKNVNLKDCKFMWIECNI 258
           PH      H N+ +++NV  K+C+ +W + N+
Sbjct: 312 PHGKCRQKHMNFVVLRNVGTKECQ-VWKKFNL 342


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 396 ALNFSI--LIWRLVYETVLSQTKH*FLIYTVQN*RLSPRNYYFNKIIT 259
           A N+S+  L W  V    L+  +H   IY      L+P  Y++NK +T
Sbjct: 256 AFNYSVFPLFWAGVEVNYLNSKEHLITIYEQLPILLAPEKYHYNKELT 303


>Z49074-1|CAA88893.3|  771|Caenorhabditis elegans Hypothetical
           protein ZK970.1a protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 396 ALNFSI--LIWRLVYETVLSQTKH*FLIYTVQN*RLSPRNYYFNKIIT 259
           A N+S+  L W  V    L+  +H   IY      L+P  Y++NK +T
Sbjct: 220 AFNYSVFPLFWAGVEVNYLNSKEHLITIYEQLPILLAPEKYHYNKELT 267


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 396 ALNFSI--LIWRLVYETVLSQTKH*FLIYTVQN*RLSPRNYYFNKIIT 259
           A N+S+  L W  V    L+  +H   IY      L+P  Y++NK +T
Sbjct: 256 AFNYSVFPLFWAGVEVNYLNSKEHLITIYEQLPILLAPEKYHYNKELT 303


>Z49073-8|CAA88892.3|  771|Caenorhabditis elegans Hypothetical
           protein ZK970.1a protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 396 ALNFSI--LIWRLVYETVLSQTKH*FLIYTVQN*RLSPRNYYFNKIIT 259
           A N+S+  L W  V    L+  +H   IY      L+P  Y++NK +T
Sbjct: 220 AFNYSVFPLFWAGVEVNYLNSKEHLITIYEQLPILLAPEKYHYNKELT 267


>Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical
           protein ZK858.2 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 534 PPLLERSPLRHPRSCFGSMLDISSNFTVDNFKLI*LRE 421
           PP+  R PL +PR    S L++++  TV     + +RE
Sbjct: 21  PPVAIRRPLPYPRDIISSPLEVATPVTVSPTDFMPIRE 58


>AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched related
           family protein 3 protein.
          Length = 914

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 160 IPHSDT*NNHSNYAIIKNVNLKDCKFMWIECNICNDFVEIVISWTESLILNCI 318
           +P S++ +  S+   +++  L DCKF  +  N+C        +W  S++L  +
Sbjct: 463 LPESESPSETSSTGSMRSSELDDCKFRRMIANVCKFLTN---TWVCSVVLGLL 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,155
Number of Sequences: 27780
Number of extensions: 252687
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)