Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k11r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.18 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.94 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    28   1.6  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.8  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.8  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   3.8  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.6  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 318 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 211
           +++ YN+   M TS+C+C++  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 741 SPSXQDLEDKLYNSILTGDYDSAVRKSLE 655
           +P   DLE  +  ++LTGD  SAV+  LE
Sbjct: 548 NPEDSDLEKNITEALLTGDVLSAVKACLE 576


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = -3

Query: 633 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 520
           +I+   V+N I+D+  +  ++C ++W G     ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 655 FQALTYSTVVVTGEDAVVQFVLEVL 729
           F  +T   V+V  EDAVV+FVL +L
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTIL 205


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -3

Query: 258 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFKRCLGARYDRERLGRPQGRWTT 79
           R R+V G ++A  + + W F   +Y   ++F+++N      L A +   ++ R  G   T
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFNL-MGFFLAALHPWTKVVRGDGNAAT 219

Query: 78  NG 73
           +G
Sbjct: 220 DG 221


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -3

Query: 321 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 226
           +HN  +N + + S ++ +  +R+ V+  GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 630 IVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVK 529
           +++++  NL I    N +EY   LW  NG  I K
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 67  DFTVRCPTALRSPEAFTIVS--SSKASFEFAVV 159
           +F   C TA  S + FT+VS  S +A  E AVV
Sbjct: 691 EFLAACATAASSEQHFTLVSETSKRAPSEIAVV 723


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +1

Query: 517 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 621
           W+VLF + L+  ++ P     V  LHGV + VN  + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,756
Number of Sequences: 5004
Number of extensions: 55181
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)