Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k11r
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    29   3.9  
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704...    29   5.2  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    29   5.2  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    29   5.2  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     28   6.9  

>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 54  QEDRRLHRSLSNGLAVSRGVHDRIEL 131
           Q+   L R +SN ++ SRG+HD +EL
Sbjct: 436 QKIASLERRISNSMSNSRGMHDNLEL 461


>11_01_0800 -
           7047425-7048253,7048340-7048927,7049050-7049268,
           7049398-7049518,7050593-7050983
          Length = 715

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = -1

Query: 713 NCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSATD--- 543
           +C TAS      +L+        K R    +    I  + R    W+   SCG+  D   
Sbjct: 579 DCATASDTTQIKLLFGAKGAVHIKGRCIGGERRFAIYRMERGVDKWTVKCSCGATDDDGE 638

Query: 542 RILSKSTSH 516
           R+LS  T H
Sbjct: 639 RMLSCDTCH 647


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 497 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 604
           MM L + GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -3

Query: 192  AKYENDVLFFIYNREFKRCLGARYDRERLGR 100
            +K  ND+ FF Y  E KR LG    RERLG+
Sbjct: 1148 SKNNNDLAFFTY--EEKRKLGYGTQRERLGK 1176


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 4    VVP-LXALERCNEPRVDFRKTGDFT-VRC 84
            VVP   +LE C EP V F ++ +FT V+C
Sbjct: 1367 VVPEFLSLESCKEPSVSFEESANFTSVKC 1395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,785,591
Number of Sequences: 37544
Number of extensions: 381174
Number of successful extensions: 1067
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)