Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k11r
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    31   0.87 
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    29   4.7  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF016670-9|AAB66107.2|  701|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -1

Query: 725 TSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSAT 546
           TS T  TTA+S   +T     +  T +   + +     +  S T + T  ST  S  ++T
Sbjct: 187 TSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTST 246

Query: 545 DRILSKSTS 519
           D   ++STS
Sbjct: 247 DSTTTESTS 255


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
           protein W06A7.3f protein.
          Length = 2488

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 7   VPLXALERCNEPRVDFRKTGDFTVRCPTALRSPEAFTIVSSSKASFEFAVVDEEQDVV 180
           V + A E C+   VD +KT +        + SPE   I SS   S    V+ E+QD +
Sbjct: 453 VAVKATESCDHV-VDSQKTLERASSLEEDIMSPEVLGITSSQTLSDYLPVISEDQDSI 509


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
           protein W06A7.3c protein.
          Length = 2484

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 7   VPLXALERCNEPRVDFRKTGDFTVRCPTALRSPEAFTIVSSSKASFEFAVVDEEQDVV 180
           V + A E C+   VD +KT +        + SPE   I SS   S    V+ E+QD +
Sbjct: 453 VAVKATESCDHV-VDSQKTLERASSLEEDIMSPEVLGITSSQTLSDYLPVISEDQDSI 509


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
           protein W06A7.3a protein.
          Length = 2607

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 7   VPLXALERCNEPRVDFRKTGDFTVRCPTALRSPEAFTIVSSSKASFEFAVVDEEQDVV 180
           V + A E C+   VD +KT +        + SPE   I SS   S    V+ E+QD +
Sbjct: 453 VAVKATESCDHV-VDSQKTLERASSLEEDIMSPEVLGITSSQTLSDYLPVISEDQDSI 509


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 180 NDVLFFIYNREFKRCLGARYDRERLGRPQGRWTTN 76
           N V++ ++NREF+ C         L  P  ++T N
Sbjct: 531 NPVIYTVFNREFRICFKRLLTCHHLNHPTQKYTNN 565


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
 Frame = -3

Query: 537 IVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKH 382
           I    FP+++  I + NY+     +YN+ LK     T+  N+ +   DG       + K+
Sbjct: 312 ITSPNFPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKY 371

Query: 381 TELVSWKFITLWENNR--VYFKAHNT 310
           +    W F  +   N   V F++++T
Sbjct: 372 SGYYEWPFFNVSTGNSMLVTFRSNST 397


>AF016670-9|AAB66107.2|  701|Caenorhabditis elegans Hypothetical
           protein K02F6.9 protein.
          Length = 701

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -3

Query: 216 REQWFFQPAKYENDVLFFIYNREFKRC---LGARYDRERLGR--PQGRWTTNGEVSGLPE 52
           +E  F  P    ++   F YN  F++C      +  R  L R  P  R+  NG +  +PE
Sbjct: 620 KEDRFRLPGLEMSEEQLFFYNYAFRQCDVYNPNKLPRNMLARQHPTNRYRVNGVIQNIPE 679

Query: 51  IYSWFITP 28
               F  P
Sbjct: 680 FAEAFNCP 687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,251
Number of Sequences: 27780
Number of extensions: 324269
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)