Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k09r
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    31   0.12 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.5  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   2.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   3.3  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   3.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   3.3  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    26   3.3  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   4.4  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   5.8  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   7.6  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   7.6  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   7.6  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 91  QVLFVFGGHDLEVYSVVFQHGGK 159
           +V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 71  PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 220
           PF+L++ R C    D  +KY L+ +     F  + L+V +L    A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 200 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSFXVIAPLTP 24
           +TP   P   S  S+P P   T+   + S P  T ST S  T   +    S  +  P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249

Query: 23  S 21
           +
Sbjct: 250 T 250



 Score = 26.2 bits (55), Expect = 2.5
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 200 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT-VSFXVIAPLTP 24
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T  S   + P  P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360

Query: 23  SNTTGT 6
             +T +
Sbjct: 361 PTSTSS 366



 Score = 26.2 bits (55), Expect = 2.5
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 200 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT-VSFXVIAPLTP 24
           VTP   P   S  S PP   +T  T  S  P  +++ S  T   +  T  S   + P  P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414

Query: 23  SNTTGT 6
             ++ T
Sbjct: 415 PTSSST 420



 Score = 26.2 bits (55), Expect = 2.5
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = -3

Query: 209 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSITRKVLVMTVSFXVIAP 33
           L++ TP T P   S  S    W  TT  T  S    T+ST   +T      T      + 
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657

Query: 32  LTPSNTTGT 6
            T S++T T
Sbjct: 658 STSSSSTAT 666



 Score = 25.4 bits (53), Expect = 4.4
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 194 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSFXVIAPLTPSN 18
           P T  +     S P P   T+  TS S PP  NST + +T  V   + S     P  P++
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTS-STSTPPPPAS 321

Query: 17  TTGT 6
           T+ T
Sbjct: 322 TSST 325


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 118 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 219
           DLE   +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 270 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 178
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
 Frame = -2

Query: 327 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 163
           +K Y P    +    + VK IN+ D   LKL    +   N  + I+FG  KD  SK +S 
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194

Query: 162 KFTPVLENNRVYFKIMSTEDKQYL-KLDN-TKGSSDDRIIXGDSTADXFKH 16
              P+L  + + F       + Y  K +N    SS D  +  DS A+  KH
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSYYPKSENRVYYSSFDLELNLDSPAE-LKH 244


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 25/92 (27%), Positives = 41/92 (44%)
 Frame = +1

Query: 61   ITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLLVDQL 240
            + + +R+     +   GG   E YS + Q   KL           +   N  VVLL D +
Sbjct: 1237 VLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLLQD-I 1290

Query: 241  EGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 336
             G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1291 HGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 441 KEKKGEVIKEAVKXLIENGKRNTMDFAXQLWTKDGKE 331
           K +K  +   + + +++  K NT++ A Q W+K  KE
Sbjct: 139 KRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = -2

Query: 288 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 109
           +  T K +N+++H+ L L     ++   FG S D +S ++    +   +N   YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201

Query: 108 EDKQYLK 88
           +   ++K
Sbjct: 202 DGFDFIK 208


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  RTFRVIELQVLFVFGGHDLEVYSVVFQ 147
           R +RV   + L+   GH L +YSV+++
Sbjct: 530 RIWRVSTGECLYHLRGHSLRIYSVLYE 556


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 201 GDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKL 85
           G  ++ +S   SW F P   N R+Y        +Q+ +L
Sbjct: 69  GGEREGSSLTHSWTFQPGKHNQRLYSDNFQEAQRQWKRL 107


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 67  RTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 159
           R + + + +V  +  GH+ E+YS+ F   GK
Sbjct: 359 RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -2

Query: 177 KKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRI 52
           +++ W +  +    R   ++ ++ED+Q+L L   K  +D +I
Sbjct: 77  QEIPWNYQDITIELRARIRLFASEDRQWLTL-TYKTKTDSKI 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,694
Number of Sequences: 5004
Number of extensions: 40102
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)