Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k09r
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.46
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 1.4
05_03_0469 + 14439472-14440905 28 3.3
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 3.3
11_06_0722 - 26678873-26680843 28 4.3
08_01_0692 + 6121443-6122266,6122812-6124798 28 4.3
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 27 7.5
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 27 7.5
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 27 7.5
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 27 10.0
08_01_0693 + 6131714-6132531,6133038-6135027 27 10.0
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 294 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 190
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 226 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 312
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 200 VTPKTKPARKSPGS--LPPCWKTTEYTSRSCPP 108
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 210 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 76
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
>11_06_0722 - 26678873-26680843
Length = 656
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 34 GAITXNDTVITRTFRVIELQVLFV 105
G + D + RTFRVIE+++ FV
Sbjct: 240 GGLLHGDRCVERTFRVIEVELAFV 263
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 223 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 336
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 194 PKTKPARKSPGSLPPCWKTTEYT-SRSCPP 108
PKTK R G+ P W + T SRS PP
Sbjct: 51 PKTKQPRGVKGTRRPSWSSWSSTASRSSPP 80
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 223 LLVDQLEGVMVPFVYELDSLLGEDHSKLDG 312
++V L GVM P + +L L+ +++SKL G
Sbjct: 8 MMVSALTGVMSPVLGKLAGLMEQEYSKLRG 37
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 249 HALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLE 142
H L D NHN + + K TS K + +PV E
Sbjct: 31 HLLAFYDIHNHNLLDYSTEKPLTSVKTFFNNSPVRE 66
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 226 LVDQLEGVMVPFVYELDSLLGEDHSKL---DGEVRF 324
+ L GVM + +L +LLG+++ KL GEV F
Sbjct: 91 MASALTGVMTSVINKLTALLGKEYMKLKGVQGEVEF 126
>08_01_0693 + 6131714-6132531,6133038-6135027
Length = 935
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 223 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 336
++V GVM P + +L L+G+++ KL G + FL
Sbjct: 5 MVVSASMGVMKPLLTKLTVLMGDEYKKLKGVRKQVSFL 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,566,641
Number of Sequences: 37544
Number of extensions: 259956
Number of successful extensions: 871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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