Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k09r
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    32   0.24 
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    30   0.72 
Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   2.9  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   2.9  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z66522-1|CAA91406.3|  425|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z68493-4|CAA92791.1|  520|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     27   8.9  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     27   8.9  
AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -3

Query: 203 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSFXVIAPLTP 24
           +VT  T        ++P    TT   S + PP  ++T + +T+      V    IAP+T 
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466

Query: 23  SNTT 12
            +TT
Sbjct: 467 PSTT 470


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -2

Query: 450 EYLKEKKGEVIKEA-VKXLIENGKRNTMDFAXQLWTKDGKEIVKSY--FPIQFRVIFTEQ 280
           EY +    E  +   VK ++   K+N +D     WT+   E +KSY  F  + R  FTE 
Sbjct: 187 EYSRLVSNETSRNVFVKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE- 245

Query: 279 TVKLINKRDHHALKLI 232
             K  N+++ + + LI
Sbjct: 246 LQKRWNRKNEYIISLI 261


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 194 PKTKPARKSPGSLPPCWKTTE--YTSRSCPPKTNST 93
           PKT+P    P ++P CW+     +     PP+ N+T
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453


>Z69384-6|CAA93414.3|  499|Caenorhabditis elegans Hypothetical
           protein T11G6.4 protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 156 TPVL-ENNRVYFKIMSTEDKQYLKLDNTKGS-SDDRIIXGDSTADXFKHH 13
           TPVL +  R   K+ + EDK  L  D+   S S+D ++  D T    KHH
Sbjct: 444 TPVLIKEKRKRHKLKAREDKALLNSDSDSNSDSEDDLLLNDQTTRR-KHH 492


>Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical
           protein K11H3.3 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 426 EVIKEAVKXLIENGKRNTMDFAXQLWTKDG 337
           +V+K  ++ L     +NT+D A Q+W K+G
Sbjct: 242 DVVKTRMQGLEAKKYKNTLDCAMQIWKKEG 271


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -2

Query: 297  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 142
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 141  NNRVYFKIMSTEDK 100
               V FK+    +K
Sbjct: 971  AGTVLFKVSIFREK 984


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -2

Query: 297  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 142
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 141  NNRVYFKIMSTEDK 100
               V FK+    +K
Sbjct: 971  AGTVLFKVSIFREK 984


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -2

Query: 366 FAXQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 187
           FA Q W  D K  +K+   IQ+    TE+   + N       + + ++N N++    SK 
Sbjct: 244 FAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVREELSKG 303

Query: 186 KTSKKVS 166
           KT    S
Sbjct: 304 KTQHSTS 310


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
           protein F37D6.1 protein.
          Length = 1227

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +1

Query: 67  RTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLLVDQLEG 246
           R F  +E+ +  + G        ++  HGGK+PG          T C++   L+ D++ G
Sbjct: 273 RVFEGLEMAITSIDGADRTNFIQLIEDHGGKVPG------TMSKTRCSY---LISDKITG 323

Query: 247 VMVPFVYELDSL 282
           V      E  S+
Sbjct: 324 VKYAKAVEWKSM 335


>Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical
           protein W04G5.9 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 243 LKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRV-YFKIMSTEDKQY 94
           ++ I   N N++ FG         +SW+F   L NN++    I   +D++Y
Sbjct: 285 IRRIRDTNTNEVYFGLVDGADHGTISWRFDKDLNNNKIGRVDIEVRDDEEY 335


>Z66522-1|CAA91406.3|  425|Caenorhabditis elegans Hypothetical
           protein F14E5.3 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 393 ENGKRNTMDFAXQLWTKDGKEIVKSYF 313
           E    NTM    +LW K+GK IVK Y+
Sbjct: 346 EEPNYNTM-IIMELWKKNGKPIVKFYY 371


>Z68493-4|CAA92791.1|  520|Caenorhabditis elegans Hypothetical
           protein C33A12.6 protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 53  IRSSLEPFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLWFCWS 232
           +R  L  F+L+S   C+SS  ++L Y+ LF ++ V        +L+    N  +L   + 
Sbjct: 1   MRKLLNIFILTSIISCVSSYKILL-YSNLFGHSHVKVLAAAADILTDAGNNVTVLMPVFD 59

Query: 233 INLR 244
            NLR
Sbjct: 60  NNLR 63


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 244 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPR--VGKQQSILQDHVHRRQ 101
           PQ     + QQN +R +Q+Q Q+   +E   R  + +QQ   Q   H+RQ
Sbjct: 314 PQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQRQ 363


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 244 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPR--VGKQQSILQDHVHRRQ 101
           PQ     + QQN +R +Q+Q Q+   +E   R  + +QQ   Q   H+RQ
Sbjct: 336 PQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQRQ 385


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 244 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPR--VGKQQSILQDHVHRRQ 101
           PQ     + QQN +R +Q+Q Q+   +E   R  + +QQ   Q   H+RQ
Sbjct: 314 PQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQRQ 363


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 244 PQVDRPTKPQQNCIR*LQRQNQQESLLEVYPR--VGKQQSILQDHVHRRQ 101
           PQ     + QQN +R +Q+Q Q+   +E   R  + +QQ   Q   H+RQ
Sbjct: 336 PQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEHQRQ 385


>AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical
           protein Y40C7B.3 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
 Frame = -2

Query: 381 RNTMDFAXQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAF 202
           ++ M +    +TK+ K  +    P+     F E   K+I  R H+       +N N I  
Sbjct: 139 KDIMTYKINKYTKNRKGNITFCIPLTHIFGFVECYNKIIYGRKHNLSLYRSPENKNSIIS 198

Query: 201 GDSKDKTSK----KVSW---KFTPVLE 142
            D +  T+K    K+ W   K  P LE
Sbjct: 199 SDPQRFTAKMVINKLQWIIPKIIPCLE 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,107
Number of Sequences: 27780
Number of extensions: 226390
Number of successful extensions: 878
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)