Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k08f
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    24   0.98 
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   2.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   4.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.2  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.2  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 440 ICSEAKWTTLTLEIQRMPLISSTVGR 517
           +  ++KW   +  I+ MPL++  +GR
Sbjct: 413 LAEDSKWRVRSAIIEYMPLLAGQLGR 438


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 224 CCCFPCTSL-EPVHSPRKRSGKSLGEGRLKSH 316
           C C PCT + E    P++ +G +  EG L +H
Sbjct: 125 CMCRPCTGVEESAVIPQEIAGYA-DEGPLSNH 155


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 118 RTRLGDAIDKTSLKILKESYNLADDKNVIASPLGVMLLLSLYESGAG 258
           +  L  A+D     +L   +NL   K+ IA P    ++L L  +  G
Sbjct: 619 KINLKHALDLDRQGLLHRQFNLPPAKDTIAVPNNGYVVLRLRANNPG 665


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 527 VCSSAQRLMISAAFFGSPKLM--LSTSLLNRFAVLENASANLYWSETYILLATVKNFG 360
           VCS  +  MI   FFG P +M  L +SL+    + E  + N  + +   +   V N G
Sbjct: 198 VCSIKELNMIFNEFFGWPIIMIILYSSLMVLNYIDEVFNNNFGYDKKQYIGVVVANVG 255


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +3

Query: 411 VGRRVLQDSESVQKRSGQH*LWRSKE 488
           +G ++  ++ + ++  G H +W S E
Sbjct: 358 IGVKIALEAATTEREGGYHDIWMSGE 383


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +3

Query: 411 VGRRVLQDSESVQKRSGQH*LWRSKE 488
           +G ++  ++ + ++  G H +W S E
Sbjct: 358 IGVKIALEAATTEREGGYHDIWMSGE 383


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 118 RTRLGDAIDKTSLKILKESYNLADDKNVIASP 213
           +  L  A+D     +L   +NL   K+ IA P
Sbjct: 619 KINLKHALDLDRRGLLHRQFNLPPSKDTIAVP 650


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 464 LSTSLLNRFAVLENASANLYWSETYILLATVKNFGS 357
           +++SL + +  +     N  ++ +YIL A    FG+
Sbjct: 236 ITSSLSSLYTCIAGYEFNANFTISYILFALFNTFGT 271


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 260 APAPDSYKESSSITPRG 210
           +P   SY+ + +ITP G
Sbjct: 242 SPQMQSYRPTGNITPHG 258


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 223 SRREETLSHSCRQLGCRIP*ESSRRSCRWHRRVLSLRIHDRTCRT 89
           S R   L+ +CR     +   +S  S R+ R ++  R H R   T
Sbjct: 241 SPRARPLARTCRDNRLLVLAGTSSPSNRFTRHLIQRRTHTRHTTT 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,113
Number of Sequences: 336
Number of extensions: 2833
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)