Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k08f
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   7.2  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   9.5  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   9.5  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 61  LVTLVCGTQAFYMFGHEFSRTRLGDAIDKTSLKILKE 171
           +V LV GT AF+M   EF   +    +  +   ILKE
Sbjct: 279 VVILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKE 315


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 106 HEFSRTRLGDAIDKTSLKILKESYNLADDKNVIAS 210
           + F+R   G       +K+L E+Y+L D+++++ +
Sbjct: 504 YAFARVYSGQVKKGQKVKVLGENYSLEDEEDMVVA 538


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 410 SWPTRSPGQR 439
           +WPTRSPG R
Sbjct: 174 AWPTRSPGDR 183


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 367 FLTVANKIYVSDQYKLADAFSRTANLFRSEVDNI 468
           FL   N+I V ++  LAD F   A + +  + N+
Sbjct: 59  FLNKKNRIIVYNKCDLADTFHTKAKVSKHRIQNL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,768
Number of Sequences: 5004
Number of extensions: 46241
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)