Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k08f
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 43 1e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 37 0.009
03_05_0294 + 22855503-22855946,22856346-22856399 34 0.083
11_02_0011 - 7337618-7338496,7338596-7338991 31 0.44
11_01_0750 - 6315126-6315896,6316371-6316784 31 0.78
06_01_0059 - 510856-511499,511595-511805 29 1.8
11_02_0012 - 7346282-7347136,7347234-7347593 29 3.1
11_01_0771 + 6453130-6454488 28 4.1
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316... 28 4.1
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 28 5.5
05_06_0044 - 25150322-25151260 28 5.5
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 5.5
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 27 7.2
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 27 7.2
07_01_0065 + 466416-467465 27 9.6
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 43.2 bits (97), Expect = 1e-04
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Frame = +1
Query: 190 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESSHTYGLLNQRYAEFDP 363
DKN+ SPL + L+L +GA ++ ++I LG GG A + ++ L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 364 ------KFLTVANKIYVSDQYKLADAFSR-TANLFRSEVDNINFGDP-KNAADIINRWAD 519
+ AN ++V +L A++R A+ +R+E ++F D + A IN W +
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 520 EQTQGHI 540
T G I
Sbjct: 151 SATAGRI 157
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 193 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESSHTY 327
+NV SPL + + LSL +GAG +++++ LGG + E H +
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAF 79
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 33.9 bits (74), Expect = 0.083
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Frame = +1
Query: 184 ADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESSHTYG--LLNQRYA 351
A NV SPL + + LSL +GAG +++++ +LG G E H + ++ A
Sbjct: 41 AGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLA 100
Query: 352 EFDP---KFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF 474
+ P + A+ +++ L +F A +++E +++F
Sbjct: 101 DSSPAGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 31.5 bits (68), Expect = 0.44
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Frame = +1
Query: 181 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGG------EAQESSHTYGLLNQ 342
++ +KN++ SP + L+L +GA + +E+ +LG E+ + GL ++
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADE 86
Query: 343 RYAEFDPKFLTVANKIYVSDQYKLADAF-SRTANLFRSEVDNINF-GDPKNAADIINRWA 516
A P+ ++ A ++ + +L A+ + A +++ NF PK + IN+W
Sbjct: 87 S-ASGGPR-VSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWV 144
Query: 517 DEQT 528
+ T
Sbjct: 145 SKAT 148
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 30.7 bits (66), Expect = 0.78
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Frame = +1
Query: 196 NVIASPLGVMLLLSLYESGAGAQSKEEIREILG------GGEAQE----SSHTYGLLNQR 345
N S V + L+L GA ++ ++ + LG GG A S +L R
Sbjct: 33 NAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDR 92
Query: 346 YAEFDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINFGD-PKNAADIINRWAD 519
P+ L A ++ L+ F A N++ S +F + P++A D IN W
Sbjct: 93 STSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVK 151
Query: 520 EQTQGHI 540
+ T+G +
Sbjct: 152 DSTKGTV 158
>06_01_0059 - 510856-511499,511595-511805
Length = 284
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 223 MLLLSLYESGAGAQSKEEIREILGGGEAQESSHTYGLLNQRYAEFD-PKFLTVANKIYVS 399
+LL + GAG S ++ GGG +++H +G+ Q +A D LTV Y +
Sbjct: 197 LLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYST 256
Query: 400 DQYKL--ADAFS 429
Q + +DA S
Sbjct: 257 PQQTIIVSDAIS 268
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 163 LKESYNLADD-----KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 312
L+ + LADD +NV+ SP+ + L+L SGA + +E+ +LG +
Sbjct: 16 LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDD 70
>11_01_0771 + 6453130-6454488
Length = 452
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 193 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 312
+N+ SPL V LSL +GA + +EI +LG +
Sbjct: 37 RNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDD 76
>10_08_0355 -
17131178-17131268,17131376-17131429,17131521-17131663,
17131812-17132096,17132168-17132301,17132383-17132556,
17132639-17132707,17132814-17132878,17133441-17133589,
17133747-17133989,17134119-17134255,17134340-17134561,
17134661-17134827,17136680-17136819
Length = 690
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 401 TSISWPTRSPGQRICSEAKWTTLTLEIQRMPLISSTVGRTNR 526
T++S P+R P +C WT TL + + V R R
Sbjct: 28 TNLSHPSRGPVDHLCGRDSWTAKTLRNEAQIDCTRGVSREQR 69
>07_03_1696 -
28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 268 KEEIREILGGGEAQESSHTYGLLNQRYAEFDPKFLTVANK 387
KE+ E+ G + +E+S LN +Y + K+ VANK
Sbjct: 847 KEQTSEVHGARKRKETSPADSGLNSQYGVTESKYELVANK 886
>05_06_0044 - 25150322-25151260
Length = 312
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 388 IYVSDQYKLADAFSRTA-NLFRSEVDNINFGDPKNAADIINRWADEQTQGHI 540
++V +L AF+ TA ++F++ V + G+P A IN W QT G +
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRSA--GNPAAARAEINEWFSSQTGGFV 52
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 284 KSLGEGRLKSHHTHTDY*ISVTQNSTRNS*LSPIKYTFPTSISWPTRSPGQRICSEAKWT 463
K+ +G L + + + + + +N T + S K P S S RSP +R ++++W
Sbjct: 375 KATADGILHTKNWDIEPLVPLPENITSTNLTSSAKDLSPFSFSTSRRSPSRR--AKSRWE 432
Query: 464 TLTLE--IQRMPLISSTVGRTN 523
+ E ++ LIS +TN
Sbjct: 433 PVVEEKVANKVELISKESAKTN 454
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 313 TLEPPLPQGFP*SLPWTVHRLQTRTRKAAAS 221
+L PPLP G P S P+ QT + A S
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQTSEKAAPLS 781
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 524 CSSAQRLMISAAFFGS--PKLMLSTSLLNRFAVLENAS 417
CS Q LM+S FFG P+ +++ S+ + LEN S
Sbjct: 341 CSQLQELMLSHNFFGGQLPRSIVNLSMTLQMLDLENNS 378
>07_01_0065 + 466416-467465
Length = 349
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 10 LFVRYSRSATVMDRLLLLVTLVCGTQAFYMFGHEFSRTRLGDAID 144
LF R + + LLL+ L+ GT AFY+ S TR A+D
Sbjct: 56 LFTGGGRPSFRLVGLLLVAYLLLGTIAFYLAMDHMSGTRTTRALD 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,905,126
Number of Sequences: 37544
Number of extensions: 347734
Number of successful extensions: 989
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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