Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k07r
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   144   9e-36
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    92   6e-20
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    79   8e-16
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   2.7  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   8.3  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  144 bits (350), Expect = 9e-36
 Identities = 63/93 (67%), Positives = 75/93 (80%)
 Frame = -2

Query: 711 DLPQSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAK 532
           D P+ G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGWDEGV KMS+GE+AK
Sbjct: 15  DFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAK 74

Query: 531 LTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 433
           LT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 75  LTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 92.3 bits (219), Expect = 6e-20
 Identities = 46/89 (51%), Positives = 59/89 (66%)
 Frame = -2

Query: 699 SGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCS 520
           +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD GVA M  G   K+T  
Sbjct: 274 NGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIP 332

Query: 519 PDYAYGQQGHPGVIPPNSTLIFDVELLRL 433
              AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 333 APMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 41/83 (49%), Positives = 50/83 (60%)
 Frame = -2

Query: 687 VVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYA 508
           V + Y G LTNGK FD +   GKPF F +G  EVI+GWD G+  M VG    +      A
Sbjct: 279 VSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMA 337

Query: 507 YGQQGHPGVIPPNSTLIFDVELL 439
           YG +  PG IP NS L+FDV+LL
Sbjct: 338 YGSKRLPG-IPANSDLVFDVKLL 359


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 277 IYTYAIRKNFIL*VNKFMVRLINEILKIIDSILSDNTYI 161
           +YTY I K+  +     +V + +EIL   D++LS N Y+
Sbjct: 361 VYTYLIHKSLNILAKSRLVEVEHEIL---DTLLSQNIYL 396


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 515 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 646
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,755
Number of Sequences: 5004
Number of extensions: 59118
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)