Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k07f
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   155   5e-39
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    95   7e-21
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    81   9e-17
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   6.5  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   8.6  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  155 bits (376), Expect = 5e-39
 Identities = 69/107 (64%), Positives = 83/107 (77%)
 Frame = +1

Query: 70  MGVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGW 249
           MGV  + IS G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 250 DEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 390
           DEGV KMS+GE+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 95.1 bits (226), Expect = 7e-21
 Identities = 50/106 (47%), Positives = 66/106 (62%)
 Frame = +1

Query: 73  GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWD 252
           GV V  +  G  ++   +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 253 EGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 390
            GVA M  G   K+T     AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 81.4 bits (192), Expect = 9e-17
 Identities = 47/103 (45%), Positives = 58/103 (56%)
 Frame = +1

Query: 76  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDE 255
           VTV+    GD     K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD 
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317

Query: 256 GVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELL 384
           G+  M VG    +      AYG +  PG IP NS L+FDV+LL
Sbjct: 318 GIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 308 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 177
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 199 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAY 318
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 76  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDS 186
           V+  ++  GD+  +P +GQT+ +  T    N KK  S
Sbjct: 175 VSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSS 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,905
Number of Sequences: 5004
Number of extensions: 52931
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)