Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k06r
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    29   0.66 
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    27   2.0  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   2.6  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   6.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   8.1  

>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 53  NLSWF-DTTYNISYTLSTYYSFNITN*LRY*IFN*SF 160
           NL+W  +T YN+S TLST  +F+  N L   I N +F
Sbjct: 49  NLTWEGNTAYNVSLTLSTCTAFDGANDLMLYISNNTF 85


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -3

Query: 313 PGSAVTSVPAPLGVARALMSAHP*V*CFM*KYKLDLTVSVGYKS*LVSPNLKALIKNLVS 134
           PGS V  V   +G  + L+  HP       KY +D++  +  K   + PN++  ++N   
Sbjct: 65  PGSYVGEVIKTMGKNKVLVKVHP-----EGKYVVDISPDIDIKE--IKPNIRVALRNDSY 117

Query: 133 KLI 125
           +LI
Sbjct: 118 QLI 120


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 39  NITMRTYHGSIQHTTFLIHYLPITLLISQINLDTKFLIKA-FKFGL 173
           ++++R Y+ S ++ +  +  LP+   I  +  D K+L+ A F + L
Sbjct: 755 SLSLRLYNVSAEYLSESLEILPVVSFIRNLRNDEKYLLNADFSYAL 800


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 329 GWSRRTRLRGHICSSTARSRSRPYVRPPLSLV 234
           GW RRT   G        +RS  ++RP LS V
Sbjct: 210 GWERRTDNLGRTYYVDHNTRSTTWIRPNLSSV 241


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -3

Query: 412 TATPLDCSMNTSLPKASAVWRPW*TTVPDGAGGPGSAVTSVPAPLGVARALMSAHP 245
           T +P+  S   SLP  SA   P   T P     PG+   SV  P     A   A+P
Sbjct: 310 TVSPIGTSFRQSLPDISAFGIPKTETNPSEVVAPGTIPISV-LPTSNFSAATPANP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,276
Number of Sequences: 5004
Number of extensions: 55895
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)