Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k06r
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532 30 1.6
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30... 29 2.8
10_08_0979 - 22000645-22000923,22000991-22001896 29 3.6
10_01_0183 + 2056891-2056947,2059136-2060089 29 3.6
05_03_0135 - 8802462-8803355 29 3.6
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 29 4.8
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 29 4.8
05_04_0257 + 19487757-19489070 28 6.4
04_04_0550 - 26187347-26188828 28 6.4
08_02_0355 - 16162342-16162598,16162748-16162792,16163676-16163685 28 8.4
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104... 28 8.4
03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820 28 8.4
>02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532
Length = 119
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 263 GASDSERCWNRCDRGAGSAGSIRHRSLPGP 352
GAS S CW RC G SI RS P P
Sbjct: 18 GASTSSGCWRRCRTGTAHT-SITRRSTPLP 46
>07_01_0039 -
306384-306551,306645-306749,306845-306949,307030-307111,
307457-307656,307754-307915,308043-308152,308255-308594,
308675-308749,308823-309032,309140-309343,309443-309562,
309643-309752,309832-309976,310716-310943
Length = 787
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 270 ATPSGAGTDVTAEPGPPAPSGTVVYQGRHTADALGSE 380
A S A ++A PPAP + + GR DAL +E
Sbjct: 29 AAGSAARAPLSANAAPPAPDPAIEFAGRDDVDALLNE 65
>10_08_0979 - 22000645-22000923,22000991-22001896
Length = 394
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 494 SQPCSLDCFFIVWLREPIS 438
S+PC LDC F+ L++P S
Sbjct: 359 SEPCHLDCIFLQMLQQPYS 377
>10_01_0183 + 2056891-2056947,2059136-2060089
Length = 336
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 242 LRVGGHKGASDSERCWNRCDRGAGSAGSIRHRSLPGPPHSR 364
+ G A+ C+ RC RGAG ++ LP P R
Sbjct: 280 ITAAGQVIAASLYSCYERCRRGAGEEAAVVSMCLPAPAMER 320
>05_03_0135 - 8802462-8803355
Length = 297
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 354 HTADALGSEVFMLQSNGVAVCRGIGDAGGD 443
HT A+G ++ QS G+ V IG GG+
Sbjct: 76 HTVSAVGPDIKHCQSRGILVLLAIGGQGGE 105
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +1
Query: 397 PMELLSVEASVTPEEMGSRNQTMKKQSREQGWEGLLVEFQCQRLLAAFRSVCARGGSLVE 576
P ELL+ +A+ E+ NQ +K+Q + G ++ + + L R G + +
Sbjct: 243 PRELLAGKAATAANEIAQENQAVKRQKLDDGRTRQILNVKTRTLPHKGRGGGLAGSTEMS 302
Query: 577 CPTSRPHQE 603
R H++
Sbjct: 303 LSAMRKHRD 311
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 261 RARATPSGAGTDVTAEPGPPAPSGTVVYQGRHTADALG 374
R + S A + +A+P PP PS VV G A+A G
Sbjct: 246 RNKLPSSSAASAASAQPQPPPPSVVVVGAGGGGAEAAG 283
>05_04_0257 + 19487757-19489070
Length = 437
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 312 GPPAPSGTVVYQGRHTADALGSEVFMLQSNGVAVCRGIGDAG 437
GP P+ +V+Q T+ + M+ + G A+C G+ D G
Sbjct: 349 GPAVPTVELVFQSEATSWVVFGANSMVATKGGALCLGVVDGG 390
>04_04_0550 - 26187347-26188828
Length = 493
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 267 RATPSGAGTDVTAEPGPPAPSG 332
RATP GAG VT P P A +G
Sbjct: 57 RATPHGAGITVTTIPFPAAEAG 78
>08_02_0355 - 16162342-16162598,16162748-16162792,16163676-16163685
Length = 103
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 266 ASDSERCWNRCDRGAGSAGSIRHRSLPGP 352
AS S CW RC G SI RS P P
Sbjct: 4 ASTSSGCWRRCQIGTAHT-SITRRSTPLP 31
>03_05_0730 +
27208293-27208813,27209052-27209173,27210429-27210477,
27210689-27210938,27211474-27211619,27211699-27211846,
27212544-27212612,27212641-27212784
Length = 482
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -2
Query: 458 WLREPISSGVTDASTDSNSIGLQHEH---LTAQSIGCVAALVDYGAGW--SRRTRLRGHI 294
WL SSG +A S+S+G+ ++ A + A+ + GA W SR T+ +
Sbjct: 123 WLSLGWSSGGAEAGRASSSVGVHPDYPPEAGAAAAAGGASDLAQGAVWASSRETKFGTGL 182
Query: 293 CSSTAR-SRSRPYVRPPL 243
R R R VRPPL
Sbjct: 183 DGMLTRLQRERERVRPPL 200
>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
Length = 292
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 421 PLQTATPLDCSMNTSLPK-ASAVWRPW*TTVPDGAGGPGSAVTSVPAPLGVARAL 260
P PL+ S+ SLP A+A T G GGP +V+S+ A A+
Sbjct: 43 PSSQCPPLEPSLTLSLPDDAAAGAAATATATASGGGGPAHSVSSLSVGAAAAAAV 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,519,111
Number of Sequences: 37544
Number of extensions: 457578
Number of successful extensions: 1753
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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