Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k06r
(711 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L19314-1|AAA65220.1| 280|Homo sapiens HRY protein. 42 0.003
CR541843-1|CAG46641.1| 280|Homo sapiens HES1 protein. 42 0.003
BC039152-1|AAH39152.1| 277|Homo sapiens HES1 protein protein. 42 0.003
AK000415-1|BAA91149.1| 280|Homo sapiens protein ( Homo sapiens ... 42 0.003
AF264785-1|AAF73060.1| 280|Homo sapiens hairy protein. 42 0.003
BC012351-1|AAH12351.1| 221|Homo sapiens hairy and enhancer of s... 34 0.44
AL645608-10|CAI15572.1| 221|Homo sapiens hairy and enhancer of ... 34 0.44
AB048791-1|BAB13510.1| 221|Homo sapiens bHLH factor Hes4 protein. 34 0.44
BC126143-1|AAI26144.1| 391|Homo sapiens ectodysplasin A protein. 25 9.2
AL450449-3|CAI39806.2| 391|Homo sapiens ectodysplasin A protein. 25 9.2
AL158141-4|CAI40385.2| 391|Homo sapiens ectodysplasin A protein. 25 9.2
AL158069-3|CAI41612.2| 391|Homo sapiens ectodysplasin A protein. 25 9.2
AF060999-1|AAC36302.1| 391|Homo sapiens ectodysplasin-A EDA iso... 25 9.2
AF040628-1|AAC77363.1| 391|Homo sapiens ectodysplasin-A protein. 25 9.2
AL450449-4|CAM14498.1| 389|Homo sapiens ectodysplasin A protein. 25 9.2
AL158141-5|CAM17680.1| 389|Homo sapiens ectodysplasin A protein. 25 9.2
AL158069-4|CAM24742.1| 389|Homo sapiens ectodysplasin A protein. 25 9.2
AF061189-1|AAC77371.1| 389|Homo sapiens ectodysplasin-A isoform... 25 9.2
AF060998-1|AAC36303.1| 259|Homo sapiens ectodysplasin-A EDA iso... 25 9.5
>L19314-1|AAA65220.1| 280|Homo sapiens HRY protein.
Length = 280
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/52 (36%), Positives = 36/52 (69%)
Frame = -3
Query: 691 LSLNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNEM 536
LS +P+V + ++RAGF+ NEV+R L++ GV+ + T+L+ HL + + ++
Sbjct: 100 LSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQI 150
>CR541843-1|CAG46641.1| 280|Homo sapiens HES1 protein.
Length = 280
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/52 (36%), Positives = 36/52 (69%)
Frame = -3
Query: 691 LSLNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNEM 536
LS +P+V + ++RAGF+ NEV+R L++ GV+ + T+L+ HL + + ++
Sbjct: 100 LSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQI 150
>BC039152-1|AAH39152.1| 277|Homo sapiens HES1 protein protein.
Length = 277
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/52 (36%), Positives = 36/52 (69%)
Frame = -3
Query: 691 LSLNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNEM 536
LS +P+V + ++RAGF+ NEV+R L++ GV+ + T+L+ HL + + ++
Sbjct: 97 LSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQI 147
>AK000415-1|BAA91149.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ20408 fis, clone KAT01678. ).
Length = 280
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/52 (36%), Positives = 36/52 (69%)
Frame = -3
Query: 691 LSLNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNEM 536
LS +P+V + ++RAGF+ NEV+R L++ GV+ + T+L+ HL + + ++
Sbjct: 100 LSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQI 150
>AF264785-1|AAF73060.1| 280|Homo sapiens hairy protein.
Length = 280
Score = 41.5 bits (93), Expect = 0.003
Identities = 19/52 (36%), Positives = 36/52 (69%)
Frame = -3
Query: 691 LSLNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNEM 536
LS +P+V + ++RAGF+ NEV+R L++ GV+ + T+L+ HL + + ++
Sbjct: 100 LSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLANCMTQI 150
>BC012351-1|AAH12351.1| 221|Homo sapiens hairy and enhancer of
split 4 (Drosophila) protein.
Length = 221
Score = 34.3 bits (75), Expect = 0.44
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 691 LSLNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNEM 536
LS +P V + ++RAGF EV+R LA GV + ++L+ HL L ++
Sbjct: 100 LSADPAV-LGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLLGHLAACLRQL 150
>AL645608-10|CAI15572.1| 221|Homo sapiens hairy and enhancer of
split 4 (Drosophila) protein.
Length = 221
Score = 34.3 bits (75), Expect = 0.44
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 691 LSLNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNEM 536
LS +P V + ++RAGF EV+R LA GV + ++L+ HL L ++
Sbjct: 100 LSADPAV-LGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLLGHLAACLRQL 150
>AB048791-1|BAB13510.1| 221|Homo sapiens bHLH factor Hes4 protein.
Length = 221
Score = 34.3 bits (75), Expect = 0.44
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 691 LSLNPTVDVDRFRAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNEM 536
LS +P V + ++RAGF EV+R LA GV + ++L+ HL L ++
Sbjct: 100 LSADPAV-LGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLLGHLAACLRQL 150
>BC126143-1|AAI26144.1| 391|Homo sapiens ectodysplasin A protein.
Length = 391
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AL450449-3|CAI39806.2| 391|Homo sapiens ectodysplasin A protein.
Length = 391
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AL158141-4|CAI40385.2| 391|Homo sapiens ectodysplasin A protein.
Length = 391
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AL158069-3|CAI41612.2| 391|Homo sapiens ectodysplasin A protein.
Length = 391
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AF060999-1|AAC36302.1| 391|Homo sapiens ectodysplasin-A EDA
isoform II protein.
Length = 391
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AF040628-1|AAC77363.1| 391|Homo sapiens ectodysplasin-A protein.
Length = 391
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AL450449-4|CAM14498.1| 389|Homo sapiens ectodysplasin A protein.
Length = 389
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AL158141-5|CAM17680.1| 389|Homo sapiens ectodysplasin A protein.
Length = 389
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AL158069-4|CAM24742.1| 389|Homo sapiens ectodysplasin A protein.
Length = 389
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AF061189-1|AAC77371.1| 389|Homo sapiens ectodysplasin-A isoform
EDA-A2 protein.
Length = 389
Score = 25.4 bits (53), Expect(2) = 9.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 206 PGIPGTTVMGPPGPPGPPG 224
Score = 23.0 bits (47), Expect(2) = 9.2
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 220 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 260
>AF060998-1|AAC36303.1| 259|Homo sapiens ectodysplasin-A EDA
isoform II protein.
Length = 259
Score = 25.4 bits (53), Expect(2) = 9.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 276 PSGAGTDVTAEPGPPAPSG 332
P GT V PGPP P G
Sbjct: 74 PGIPGTTVMGPPGPPGPPG 92
Score = 23.0 bits (47), Expect(2) = 9.5
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Frame = +3
Query: 309 PGPPAPSGTVVYQG-RHTADALGSE-----VFMLQSNGVAV 413
PGPP P G QG AD G+ V LQ G A+
Sbjct: 88 PGPPGPQGPPGLQGPSGAADKAGTRENQPAVVHLQGQGSAI 128
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,080,387
Number of Sequences: 237096
Number of extensions: 2347086
Number of successful extensions: 8877
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8857
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -