Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k06r
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    30   1.9  
Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    29   4.3  
U53147-3|AAM29659.1|  550|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 273 TPSGAGTDVTAEPGPPAPSG 332
           TPSG G      PGPP P+G
Sbjct: 201 TPSGGGEGPAGPPGPPGPAG 220


>Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical
           protein C15A11.1 protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 276 PSGAGTDVTAEPGPPAPSGTVVYQGRHTADALGSE 380
           P  AGT  T EPG P P+G     G    DA   E
Sbjct: 171 PGAAGTTSTNEPGSPGPAGPPGPAGPAGEDAAAPE 205


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 276 PSGAGTDVTAEPGPPAPSG 332
           P   GT  T +PGPP P+G
Sbjct: 224 PGAGGTTSTNQPGPPGPAG 242


>U53147-3|AAM29659.1|  550|Caenorhabditis elegans Hypothetical
           protein C01B7.1b protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = -2

Query: 557 RAQTERNAASSRWH*NSTSKPSQPCSLDCFFIVWLREPISSGVTDASTDSNSIGLQHEHL 378
           R +   N  S+    NS   P+ P  +           +  GVT A+++   I ++ EHL
Sbjct: 58  RLKQNGNTTSTSLTSNSGLYPTDPTIISNHTPSMQLSCVECGVTKANSEEMEIHIKTEHL 117

Query: 377 TAQSIGCVAALVDYGAGWSRRTRLRGHICSSTARSRSR 264
                 C   LV+  +      ++R H+ SS  ++ S+
Sbjct: 118 KWLPFQCPMCLVERASD----AQMREHLHSSHQKNMSK 151


>U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical
           protein C01B7.1a protein.
          Length = 935

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = -2

Query: 557 RAQTERNAASSRWH*NSTSKPSQPCSLDCFFIVWLREPISSGVTDASTDSNSIGLQHEHL 378
           R +   N  S+    NS   P+ P  +           +  GVT A+++   I ++ EHL
Sbjct: 58  RLKQNGNTTSTSLTSNSGLYPTDPTIISNHTPSMQLSCVECGVTKANSEEMEIHIKTEHL 117

Query: 377 TAQSIGCVAALVDYGAGWSRRTRLRGHICSSTARSRSR 264
                 C   LV+  +      ++R H+ SS  ++ S+
Sbjct: 118 KWLPFQCPMCLVERASD----AQMREHLHSSHQKNMSK 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,398,724
Number of Sequences: 27780
Number of extensions: 338392
Number of successful extensions: 1199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)