Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k06f
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   4.9  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.5  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   8.6  

>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 72  EIAYSVAEDGPQPVSRTYQYRKVM 143
           E+  ++AED P+ VS+ Y+Y  V+
Sbjct: 665 ELDLALAEDAPEFVSKVYRYLHVL 688


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 1   DSAFYALRKRTLL--LTTHIHSTC 66
           D++F+  R R L   L TH+H+TC
Sbjct: 360 DNSFFRNRHRLLAIHLATHLHTTC 383


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 212 HQLLEFVEAAVDASA-PLALKHRFHHFAILISARDWLRTVFRDR--IRDLV 69
           +QL+E    A  A+    ALK  F+    L +ARDW R V  DR   RDLV
Sbjct: 822 NQLIESSREAFSATLFKAALKSCFYD---LQNARDWYREVTADRKMHRDLV 869


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 108 PVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 212
           P +R  + R   K + ERKRR  I    D+LK+ +
Sbjct: 328 PYTRNPELRTSHK-LAERKRRKEIKELFDDLKDAL 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,698
Number of Sequences: 5004
Number of extensions: 42203
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)