Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k06f
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0979 - 22000645-22000923,22000991-22001896                       29   2.9  
03_02_0375 + 7880543-7880872,7881291-7881365,7881445-7881531,788...    28   5.0  
09_04_0432 + 17510820-17510996,17511076-17511546                       28   6.6  
04_04_1170 + 31449978-31450135,31451625-31451661,31452158-314522...    28   6.6  
10_02_0003 + 4022220-4022900                                           27   8.7  
01_02_0016 - 10199085-10199170,10200649-10201456                       27   8.7  

>10_08_0979 - 22000645-22000923,22000991-22001896
          Length = 394

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 515 SQPCSLDCFFIVWLREPIS 571
           S+PC LDC F+  L++P S
Sbjct: 359 SEPCHLDCIFLQMLQQPYS 377


>03_02_0375 +
           7880543-7880872,7881291-7881365,7881445-7881531,
           7881619-7881723,7881806-7881876,7882552-7882840
          Length = 318

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 95  RRSAASLAHLSISQSDETDA*AQEARSHQPLPRRTQGADGQRSTI 229
           R   A  A  S ++ DE D+   +   H PL R  +G + Q+ST+
Sbjct: 75  RAKKAGNAGASKAKKDEDDSGDDDDDYHVPLSRSNKGKEKQKSTV 119


>09_04_0432 + 17510820-17510996,17511076-17511546
          Length = 215

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 156 ERKRRARINRCLDELKELMVSA 221
           ERKRR RIN  LD L+ L+ SA
Sbjct: 36  ERKRRERINAHLDTLRGLVPSA 57


>04_04_1170 +
           31449978-31450135,31451625-31451661,31452158-31452273,
           31452389-31452419,31452597-31452662,31452753-31452818,
           31452969-31453223,31453598-31453687
          Length = 272

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 93  EDGPQPVSRTYQYRKVMKPMLERKRRA-RINRCLDELKELMVSALQSEGENVAKLEKA 263
           E   Q   +T + R V+  ++ RKRR  RIN  L  L+EL+ +  ++  + V+ L++A
Sbjct: 91  EAASQEEEQTPKLRSVIAHLVSRKRRRDRINEKLKALQELLPNCTKT--DKVSMLDEA 146


>10_02_0003 + 4022220-4022900
          Length = 226

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 161 QEARSHQPLPRRTQGADGQRSTI*RRECSQIGKS*YLGTDRSPSSQAETPASLVTQPYRG 340
           QE +      RR + A  Q S+I    C     S    TD +PS+ +   AS++ +    
Sbjct: 120 QEQQQAYEAARRAKAASTQSSSI---RCVTSNPSLSTSTDPAPSATSYASASVLRRAAFD 176

Query: 341 CGSL 352
           CGS+
Sbjct: 177 CGSI 180


>01_02_0016 - 10199085-10199170,10200649-10201456
          Length = 297

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 272 GTDRSPSSQAETPASLVTQPYRGCGSLQSWIYSRRQRS 385
           G D   + QA + ASL   P RG  +   W+YS+   S
Sbjct: 108 GDDDPRNPQAPSSASLPGTPDRGAPAPSPWMYSKEYAS 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,361
Number of Sequences: 37544
Number of extensions: 329641
Number of successful extensions: 1027
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)