Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k06f
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.     50   1e-06
AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cel...    50   1e-06
U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop heli...    30   1.5  
U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop heli...    30   1.5  
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.
          Length = 173

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +3

Query: 144 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 284
           KP++E+KRRARIN+ L +LK++++          +K EKADILE+ V
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAV 72


>AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cell
           lineage protein 22 protein.
          Length = 173

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +3

Query: 144 KPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 284
           KP++E+KRRARIN+ L +LK++++          +K EKADILE+ V
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAV 72


>U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop helix
           protein 27 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 120 TYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 284
           T   R+ +K   E+ RR + + C  ELK  +++      E   KLE+  ILE+ +
Sbjct: 142 TESERRKVKTEREKIRRKKQDDCYAELKFFILNKQMGSYEQRLKLERITILEIII 196


>U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop helix
           protein 25 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 120 TYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV 284
           T   R+ +K   E+ RR + + C  ELK  +++      E   KLE+  ILE+ +
Sbjct: 134 TESERRKVKTEREKIRRKKQDDCYAELKFFILNKQMGSYEQRLKLERITILEIII 188


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 90  AEDGPQPVSRTYQYRKVMK-PMLERKRRA 173
           AEDG +P+S+T Q RK+ K   +ERK RA
Sbjct: 50  AEDGDKPMSKT-QKRKLKKAAAIERKERA 77


>Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical
           protein T07G12.5 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 168 ASCAQASVSSLCDIDKCARLAADRLPRPNTRSR 70
           ASC  A + S+ D + CA+++    P P+  +R
Sbjct: 284 ASCFAAMIESIGDYNLCAKISKQSRPPPSNTNR 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,987,863
Number of Sequences: 27780
Number of extensions: 250039
Number of successful extensions: 718
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)