Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k05f
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    28   1.2  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    27   2.7  
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    26   3.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   3.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.3  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   8.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   8.3  

>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 143 TVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 304
           T   +   PC+++ L  +     A+   +FT   +TT+   G  GL+ GA I F
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 90  NSTSSPQGYAGKWTPA 137
           NS+S+PQGYA  WTP+
Sbjct: 113 NSSSNPQGYA--WTPS 126


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 468 AATERMSGLFSKHKKQLLTDCIVNTLCMYLHK 563
           A  + ++ L  K+KK+LLT  +++  C+Y  K
Sbjct: 87  AVAKEINSLQKKNKKELLTPIMLDMPCVYFVK 118


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 241  LWCKVERNLRVFPFLEVAQSTVNTGVNSDLVHSTRAGVH 125
            LW K   N  V   L V  STVN  +  D++    A +H
Sbjct: 1711 LWFKFGNNSNVINTLNVGISTVNIDIWLDVIPQLIARIH 1749


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 177 LTQGSIRTSFTVHALASTSRHSLVVTTLNSARPQPRNAANNS 52
           L   ++ T+    A   TS HS+  T + S  P P  + N++
Sbjct: 39  LPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNST 80


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 295 FSAILQPKEAGLEFSCGELWCKVERNLRVFPFLEVAQSTVNTGVN 161
           F  +LQ K AG   S  +LW +      V P    A +T ++  N
Sbjct: 220 FEQVLQKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSSVTN 264


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +1

Query: 22  QRVQHGSLLFAVIRCIPRLWSS*IQRRHHKAMPGSGRQRVYCERGPN*PLC*QSTVPPQE 201
           +++  G   FA + C  R        RH+K+  G    R   ERG   P   ++ V    
Sbjct: 619 EQLHTGIKAFACVTCNQRFARMDALNRHYKSEVGQNCLRTATERGIQVPPSRKTAVASTS 678

Query: 202 REK 210
           ++K
Sbjct: 679 KQK 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,365
Number of Sequences: 5004
Number of extensions: 52743
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)