Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k05f
         (595 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, t...    55   2e-07
X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...    55   2e-07
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...    55   2e-07
BC069632-1|AAH69632.1|  549|Homo sapiens tigger transposable ele...    30   7.1  
BC069623-1|AAH69623.1|  549|Homo sapiens tigger transposable ele...    30   7.1  
AF251050-1|AAK34940.1|  511|Homo sapiens jerky protein.                30   7.1  

>AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 precursor variant protein.
          Length = 151

 Score = 55.2 bits (127), Expect = 2e-07
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
 Frame = +2

Query: 101 VTTRLCREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGL 280
           V  R C  VD     + EV + PC  ++ C L KG++  V+  FT    +   K  + G+
Sbjct: 22  VQFRDCGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNVQSKSSKAVVHGI 77

Query: 281 KNGAEIPFDALYNADAC-TLTSCPTEAGKTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNE 457
             G  +PF  +   D C +  +CP +  KT +    L +  + P+     +W+L ++ N+
Sbjct: 78  LMGVPVPF-PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQ 136

Query: 458 SQMCCYRTNVRLV 496
           S + C+   V++V
Sbjct: 137 S-LFCWEIPVQIV 148


>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
 Frame = +2

Query: 116 CREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAE 295
           C  VD     + EV + PC  ++ C L KG++  V+  FT    +   K  + G+  G  
Sbjct: 27  CGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVP 82

Query: 296 IPFDALYNADAC-TLTSCPTEAGKTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNESQMCC 472
           +PF  +   D C +  +CP +  KT +    L +  + P+     +W+L ++ N+S + C
Sbjct: 83  VPF-PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQS-LFC 140

Query: 473 YRTNVRLV 496
           +   V++V
Sbjct: 141 WEIPVQIV 148


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
 Frame = +2

Query: 116 CREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAE 295
           C  VD     + EV + PC  ++ C L KG++  V+  FT    +   K  + G+  G  
Sbjct: 27  CGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVP 82

Query: 296 IPFDALYNADAC-TLTSCPTEAGKTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNESQMCC 472
           +PF  +   D C +  +CP +  KT +    L +  + P+     +W+L ++ N+S + C
Sbjct: 83  VPF-PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQS-LFC 140

Query: 473 YRTNVRLV 496
           +   V++V
Sbjct: 141 WEIPVQIV 148


>BC069632-1|AAH69632.1|  549|Homo sapiens tigger transposable
           element derived 7 protein.
          Length = 549

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 298 NFSAILQPKEAGLEFSCGEL--WCKVERNLRVFPFLEVAQSTVNTGVNSDLVHSTRAGV 128
           N S ++QP   G+  SC  L  W ++E +L +F   +  Q   + GV+   +++ ++ +
Sbjct: 322 NTSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380


>BC069623-1|AAH69623.1|  549|Homo sapiens tigger transposable
           element derived 7 protein.
          Length = 549

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 298 NFSAILQPKEAGLEFSCGEL--WCKVERNLRVFPFLEVAQSTVNTGVNSDLVHSTRAGV 128
           N S ++QP   G+  SC  L  W ++E +L +F   +  Q   + GV+   +++ ++ +
Sbjct: 322 NTSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380


>AF251050-1|AAK34940.1|  511|Homo sapiens jerky protein.
          Length = 511

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 298 NFSAILQPKEAGLEFSCGEL--WCKVERNLRVFPFLEVAQSTVNTGVNSDLVHSTRAGV 128
           N S ++QP   G+  SC  L  W ++E +L +F   +  Q   + GV+   +++ ++ +
Sbjct: 322 NSSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,395,037
Number of Sequences: 237096
Number of extensions: 1881067
Number of successful extensions: 3539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3536
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)