Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12k05f
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologu... 60 1e-09
Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical p... 30 1.1
AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical ... 30 1.1
AL033513-2|CAA22079.2| 439|Caenorhabditis elegans Hypothetical ... 29 1.9
AL021446-4|CAA16267.2| 439|Caenorhabditis elegans Hypothetical ... 29 1.9
Z77656-5|CAH04702.1| 308|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like ... 28 4.4
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 5.8
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 5.8
>AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologue
protein 1 protein.
Length = 154
Score = 60.1 bits (139), Expect = 1e-09
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Frame = +2
Query: 89 EFNVVTTRLCREVDASACTVNEVRIDPCV-----NSRLCHLKKGKNAKVSFDFTPQFSTT 253
EF + ++C+ S TV++V+ D C ++C KKG + F P T
Sbjct: 16 EFIEIGYKVCK----SDGTVSQVKADGCELTVKDGKKVCLFKKGSRPIIQIAFKPSKDTD 71
Query: 254 KLKTGLFGLKNGAEIPFDALYNADACTL-TSCPTEAGKTQTLDFSLHIGKKLPTGN-FEF 427
KLKT + G+ + N+DACT CP AG+ Q + S+ I + P G +
Sbjct: 72 KLKTSVRAKVGGSAMVDFPQTNSDACTYGVKCPVSAGENQIFEQSISITENHPAGEVIQV 131
Query: 428 KWKLWNEDNESQMC 469
W+L D+ ++C
Sbjct: 132 NWQLTRPDSGKEVC 145
>Z92829-14|CAB07342.2| 337|Caenorhabditis elegans Hypothetical
protein F10A3.8 protein.
Length = 337
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Frame = -1
Query: 265 GLEFSCGELWCK-----VERNLRVFPFLEVAQSTVNTGV 164
G+ FSC + WCK + + +F LE + T NTGV
Sbjct: 54 GIYFSCCDFWCKPYVHMSKNSFAIFNVLEETKLTQNTGV 92
>AL023838-4|CAA19504.1| 218|Caenorhabditis elegans Hypothetical
protein Y43C5A.4 protein.
Length = 218
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 162 LTPVLTVDCATSRKGKTRRFLSTLHHNSPQLN 257
LTP++T C+ KGK ++ LS+ H N
Sbjct: 31 LTPIITAQCSKKPKGKKKKKLSSSHEKKRSEN 62
>AL033513-2|CAA22079.2| 439|Caenorhabditis elegans Hypothetical
protein Y70D2A.1 protein.
Length = 439
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -1
Query: 538 FTMQSVSSCFLCLLNKPDIRSVAAHL 461
FT +++ F CL+N PDIRS+ AH+
Sbjct: 316 FTKFAMNFYFYCLIN-PDIRSICAHV 340
>AL021446-4|CAA16267.2| 439|Caenorhabditis elegans Hypothetical
protein Y70D2A.1 protein.
Length = 439
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -1
Query: 538 FTMQSVSSCFLCLLNKPDIRSVAAHL 461
FT +++ F CL+N PDIRS+ AH+
Sbjct: 316 FTKFAMNFYFYCLIN-PDIRSICAHV 340
>Z77656-5|CAH04702.1| 308|Caenorhabditis elegans Hypothetical
protein F07B10.6 protein.
Length = 308
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 410 TGNFEFKWKLWNEDNESQMCCY 475
+G+F F ++L+N+D SQ C+
Sbjct: 59 SGHFVFNYQLFNDDKSSQAACF 80
>AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like
(grd related) protein31 protein.
Length = 156
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 536 YYAICEQLFFVFTKQA*HSFCSSTSGSHCLHSKA 435
+ +C + FVFT +A ++C +T H H+ A
Sbjct: 122 FVVVCSEKPFVFTFRADAAYCGATKNGHNCHAFA 155
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 140 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 238
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 140 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 238
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 140 CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 238
CT ++ ++PC + CHL+ G + S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,429,396
Number of Sequences: 27780
Number of extensions: 306685
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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