Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k04r
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0104 + 11163634-11163691,11163929-11164193,11165041-111651...    30   2.1  

>01_02_0104 +
           11163634-11163691,11163929-11164193,11165041-11165163,
           11165275-11165311,11165320-11165514,11165673-11165792,
           11165979-11166173
          Length = 330

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +2

Query: 251 YNQRLSRPLHQRLTFNIFFNTQ*YNLVN*SDTTSKFRHTHTHVRNETHIHSFQ*NNW 421
           Y + LSRP  +  +F     TQ  NL   S  TS    T TH  N+ HIH    + W
Sbjct: 276 YKEELSRPFDEAASFLSSIQTQLSNLC--SGATSPPATTATHSGNQ-HIHYICMHTW 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,646,970
Number of Sequences: 37544
Number of extensions: 304954
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)